Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01562 ATGGCATCAAACATTGTTAAGCTATTCTTTTCCCTCTCTTTATTTTTCTCAGTTTTCTCATTATCGTCATCTCTTTCTTCGTCTATAGAATATTGGTGCAACCAAACTCCTCACCCTGAGCAATGCAAATACCATATGAGCCACGATCACCACCGGTTCAGACCGAACCATGCTTCAGAGTTCAACAAAATGCTGGTTCAAATAGCACTGGACCAAGCCCAAGCCATGCGTAATAAAGCTCAAGAATATGGCCCTAAATGTGTGACCAATATGCAGAAATGTGTATTCAGTGATTGTTTAAAGCTCTATGACAATACCATCTTCCATCTTAACCAAACCCTTCATGGCCTACACATATCTTCTTGCTCTCTATCAGACGCACAAACATGGCTCAGCACTTCGCTCACAAACATCGAAACTTGCCGGAGCGTCGCATTGCAGCTCGGAGTCGGAGAGTTTACAACTCAACATAATGTGAGCGACAACGTTAGAAAGATGATAAGCAATGTGTTGGCCGTCAACGGGAAATTACTGAAGCAAGAGAATTACACAGAAGAAAAGATCAAAGCTCATGGTTTTCCGAGTTGGTTTTCTCGGCACGACAGGAGGTTGTTGAGTTTGAAGCCATCTTCTGTGAAGGCAAATCTTGTGGTGGCTCAAGATGGGACAGGGCATTTTAAGACGGTGCAAGCCGCCATTGATGCAGCTTCAAGGAGAAAATTGAAGACGAGGTTTGTGATAAGAGTGAAGAAAGGGATTTATGAAGAGAATATTGAAGTTGATACGGATAATGAAAATCTCATGATTATTGGTGATGGAATGAGACTCACCATTATAACTGGTAGTAAGAGTGTCAAAGATGGAATTACTCCCTCTATGTCTGCAACTGCAGGTGTCGATGGTGCTCACTTCATTGCACGAGACATAACTTTTAGAAACACGGCTGGTCCTGAAAAAGGTCAAGCCGTGACACTCCGAGCAGCCTCCGACCTTTCAGTCTTCTACCGGTGCTCCATTGAAGGCTATCAGGACACTCTAAGGGCTGATTCACAACGTCAATTCTATAGAGATTGTAGAATCTTCGGCACAGTGGATTTCATTTGGGGAAATGCTGCAGTTGTTCTACAAAATTGTACAATTCTCGTAAGAAAGCCACTTCAAGGACAACCAAACATGATCACAGCACAAGGACGAGACGACCCGTTTCAAAACACCGGAATAGCAATAATCAGTTGTCAAATCCGAGCAGCGCCGGAATTCAGGTCGGTTTATCACTCATTTGAAACCTACTTGGGTCGACCATGGCACCAATACGCTCGAGTGGTTGTCATGAAAACTTATATTGAAGGCTTGGTAAATCCATTGGGATGGTCTCGATGGGACAATAGTTCCGTTGGTGAAGATACATGTTACTTTGGGGAATATATGAACTATGGGGCTGGTTCGTCTACAAAAAGTAGAGTACAATGGCCTGCCTTTCATGTTATAACTAATCCAAATGAGGCAAACCAGTTTAGTGTTGGTAGCTTCCTTGCTGGTGGCACATGGTTGCCTCGCACTGGGGTCCCTTTTAATATTGGTGTTAATTAA 1590 0.4327 MASNIVKLFFSLSLFFSVFSLSSSLSSSIEYWCNQTPHPEQCKYHMSHDHHRFRPNHASEFNKMLVQIALDQAQAMRNKAQEYGPKCVTNMQKCVFSDCLKLYDNTIFHLNQTLHGLHISSCSLSDAQTWLSTSLTNIETCRSVALQLGVGEFTTQHNVSDNVRKMISNVLAVNGKLLKQENYTEEKIKAHGFPSWFSRHDRRLLSLKPSSVKANLVVAQDGTGHFKTVQAAIDAASRRKLKTRFVIRVKKGIYEENIEVDTDNENLMIIGDGMRLTIITGSKSVKDGITPSMSATAGVDGAHFIARDITFRNTAGPEKGQAVTLRAASDLSVFYRCSIEGYQDTLRADSQRQFYRDCRIFGTVDFIWGNAAVVLQNCTILVRKPLQGQPNMITAQGRDDPFQNTGIAIISCQIRAAPEFRSVYHSFETYLGRPWHQYARVVVMKTYIEGLVNPLGWSRWDNSSVGEDTCYFGEYMNYGAGSSTKSRVQWPAFHVITNPNEANQFSVGSFLAGGTWLPRTGVPFNIGVN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01562 529 SMART PMEI_2 24 173 IPR006501 GO:0004857
Accr13g01562 529 PANTHER PECTINESTERASE 18 518 - -
Accr13g01562 529 CDD PMEI-like_3 32 179 - -
Accr13g01562 529 SUPERFAMILY Pectin lyase-like 212 527 IPR011050 -
Accr13g01562 529 FunFam Pectinesterase 209 528 - -
Accr13g01562 529 Pfam Pectinesterase 215 513 IPR000070 GO:0030599|GO:0042545
Accr13g01562 529 Gene3D - 209 528 IPR012334 -
Accr13g01562 529 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Accr13g01562 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 178 IPR035513 -
Accr13g01562 529 NCBIfam pectinesterase inhibitor domain 1 177 IPR006501 GO:0004857
Accr13g01562 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 178 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01562 Accr-Chr13 26489229 26490910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01562 32 528 Carbohydrate Esterase AT5G51490 53.571 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01562 K01051 - gmx:100807908 632.484