Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01559 ATGGCATCAATCATTGTTAACCTTTTATTTTCCCTCACTTTATTTTCTTCGCTTTTATCAATATCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTATAGACTTTTGGTGCAACCAAACTCCTCACCCTAAGCCATGCAAATACCACATGAAACACAGTCACCACCGGTTCAGACCAAGCCATCCCTCAGAATTCAGCAAAATGCTGGTTCAATTAGCACTGGACCAAGCCCAAACCATGCATAAGGAAGCTCAAGAATATGGCTCAGAATGTGTGACCAAGATGCAGAAATGTGTGTTCATTGACTGTTTAAAGCTCTACGATAATACCATCTTTCATCTAAACCGAACCCTTCATGGCCTACACACAATTTCTTGCTCACTATCAGATGCACAAACATGGCTCAGCACTTCGCTCACAAACATCGAAACTTGCCGGAGTGTCGCATTGCAGATTGGTGTCAGAGAGTTTCCATCTCAAAATAATGTGAGCTACAACGTTAGAAAGATGATAAGCAATGTGTTGGCTGTTAATGGGAAATTCCTGATGCAAGAGAACTACACAGAAGAAGAGACAAAAGCTCATGAGTTTCCAAGTTGGTTTTCTCGGCATGACCGGAGGTTGTTGAGCTCGAGGCGATCATCGGTGAAGGCAAATCTTGTGGTGGCTCAAGATGGCACTGGCCATTTTAAGACGGTGCAAGCTGCCATTGATGTAGCATCAAGGAGAAAAGTGAAGACGAGGTTTGTGATAAGAGTGAAGAAAGGGATTTATGAAGAGAATATTGAAGTTGATAAGGATAATGAAAATCTCATGATTATGGGTGATGGAACAAGTGTCACCATTATCACTGGTAGTAAAAGTGTCAAAGATGGAATTACCCCCGCTAGCTCCGCAACAGCAGGTATAGATGGTGCTAACTTCATTGCACGAGACATCACTTTCAGAAATACGGCTGGTGCTGAAAAGGGTCAAGCTGTGGCACTTCGATCAGCCTCCGACCTCTCCGTCTTTTATCGGTGTTCCATTGAAGGCTATCAAGATACACTAATGGCTCATGCACAACGCCAATTCTATAGAGATTGTAGAATTTTTGGCTCAGTGGATTTCATTTGGGGGAATGCTGCTGTTGTTATACAAAATTGTAGAATTCTAGTAAGAAAGCCACTTCAAGGACAAGCAAACATGATCACTGCGCAAGGACGAGGTGATCCGTTTCAAAACACAGGAATATCAATAATCAATTCTCAAATTCGAGCCGCGCCGGATTTCAGGCCGGTTTATCACTCATATGAAACCTATTTGGGTCGGCCGTGGCAGCAATATGCTCGAGTGGTTGTCATGAAAACTTACATTGAAGGCTTGGTGAATCCATTGGGATGGTCTTCTTGGGGAGATAGTAATTTTGCTCAAGATACGTGTTATTTTGGGGAATATATGAACTATGGTGCTGGTTCATCAACAAAAAGTAGAGTACAATGGCCTGGCTTTCATGTCATAACTAATCCAAATGAGGCAAGCCAGTTCAGTGTTGCTAGTTTACTTGCTGGTCACACATGGTTGCCTCGTACTGGGGTGCCTTTCACTATTGGTGTTTAA 1599 0.4259 MASIIVNLLFSLTLFSSLLSISSSSSSSSSSSIDFWCNQTPHPKPCKYHMKHSHHRFRPSHPSEFSKMLVQLALDQAQTMHKEAQEYGSECVTKMQKCVFIDCLKLYDNTIFHLNRTLHGLHTISCSLSDAQTWLSTSLTNIETCRSVALQIGVREFPSQNNVSYNVRKMISNVLAVNGKFLMQENYTEEETKAHEFPSWFSRHDRRLLSSRRSSVKANLVVAQDGTGHFKTVQAAIDVASRRKVKTRFVIRVKKGIYEENIEVDKDNENLMIMGDGTSVTIITGSKSVKDGITPASSATAGIDGANFIARDITFRNTAGAEKGQAVALRSASDLSVFYRCSIEGYQDTLMAHAQRQFYRDCRIFGSVDFIWGNAAVVIQNCRILVRKPLQGQANMITAQGRGDPFQNTGISIINSQIRAAPDFRPVYHSYETYLGRPWQQYARVVVMKTYIEGLVNPLGWSSWGDSNFAQDTCYFGEYMNYGAGSSTKSRVQWPGFHVITNPNEASQFSVASLLAGHTWLPRTGVPFTIGV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01559 532 SUPERFAMILY Pectin lyase-like 215 531 IPR011050 -
Accr13g01559 532 Pfam Pectinesterase 219 517 IPR000070 GO:0030599|GO:0042545
Accr13g01559 532 Gene3D - 213 532 IPR012334 -
Accr13g01559 532 Pfam Plant invertase/pectin methylesterase inhibitor 32 176 IPR006501 GO:0004857
Accr13g01559 532 CDD PMEI-like_3 36 181 - -
Accr13g01559 532 SMART PMEI_2 28 177 IPR006501 GO:0004857
Accr13g01559 532 FunFam Pectinesterase 213 532 - -
Accr13g01559 532 PANTHER PECTINESTERASE 13 522 - -
Accr13g01559 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 181 IPR035513 -
Accr13g01559 532 NCBIfam pectinesterase inhibitor domain 8 178 IPR006501 GO:0004857
Accr13g01559 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 181 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01559 Accr-Chr13 26416176 26418270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01559 36 532 Carbohydrate Esterase AT5G51490 54.762 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01559 K01051 - gmx:100816908 652.514