Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr13g01554 | ATGGACGCTCTTGAGTCGAACCCTACTCCTCCTCCCTTTCTTCCGCCCGATCATAACCCTCCTCCTCCGCCACCGGAAAGCTTCGAATCGGATCTCCAGAAGCCATATGAGCAAACTGTGAATTTCGATTATCAAAATTCTTTGAAAACCCTAGCTTCGGATGGCCAAAACTTTAGCGGTCAACCCCAATCTGCTAATGGGAATGGCCACGTGAACGGACTGGATAACAGTCAGGGCGGTGCCGATAGCAATAGCAATTCGAAGCCTTTGAGCGCGAGGCCTTTGATTTCTGAAAACGCCGGTACGAACAATACCCAGAGCGGCACCGACAAGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAACGTCGCCGCCGTAGTAGATGGGATCCGCAACCTGATTCCAATGACCAGAGTGGCGGTGAAGCTGGTGCCGGAACAAAGAGGAGGAAGTCACGCTGGGCTGATGATGAGCCGAAGCCGGTGATTCAGCTTCCCGATTTCATGGGCGGTATTGAGTTTGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGGATGCTGCAATCGGGTCTGCCTCTTGATGATCGCCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAACATGGGAATTAGAATTAACACTAGAGAATATCGTGCCCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCTGCATTCAAGCCACCCGCTGATTATAGGCCACCGAAGCTTCAGAAGAAGCTGTATATACCAATGAAAGAATATCCGGGTTACAACTTTATAGGGCTTATTATTGGTCCTCGAGGCAATACACAGAAGCGGATGGAAAGAGAAACTGGTGCTAAAATTGTGATTCGGGGTAAAGGGTCCGTGAAAGAGGGTAGACTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAAAATGAAGATTTGCATGTCCTTGTGGAGGCAGACACACAAGAATCACTTGATGCTGCCGCAGGCATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCAGCCTTGAATGGTACAATTAGGGATGAAGAATATTGCAGGCTGTGTGGTGAACCTGGCCATCGCCAATATGCATGTCCTACGCGCACTTCTACATTTAAGAGTGAAGTAGTCTGTAAGCACTGTGGGGATGGTGGTCACCCCAGCATAGATTGTCCAGTGAAGGGAGCCACTGGCAAGAAGATGGATGACGAGTATCAGAACTTCTTGGCAGAGCTGGGAGGGACAGTTCCAGAATCAGCAATAAAGCAGAATCCCACGTTGGCAATTAGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGATCGAGTGGTGGTACTTCACAACCCGGCTTAGGGGCTAATCCAATTAAAAAGGAAATTGATGATACAAATTTGTATATTGGGTATTTGCCGCCCACTCTTGATGATGATGCTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAGGTTATAAAAGATCGGATGACTGGTTTGAGTAAAGGATATGGGTTTGTCAAGTATGCTGATATCCAAATGGCCAATAATGCAATAATGGCCATGAATGGCTATCGCCTTGAGGGCAGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTACTGTGCCTCCTGGCCCTCCGGCATCAGCCATGCCCACATATCCAATTTCAAGCCAGCCAATTGGTGCCTATCCATCCCAACAATATGCTGGTGGTGGTCCTCTTGGTGCTCCCCCCAATGGGAGTTTTACCGGTGCCCCAGTTCCATGGGGACCTCCTGTCCCTCCACCGTATGCTACTTACGCTCCTCCCCCTCCTGGATCAACTATGTACCCTCCGATTCAAGGTCAATCTATACCTCCATATGGTGTTCAGTATCCTCCAGTCCAGACAGGCCCTCCGGGTGCCCCATCCCAGCCTACAACTTCTAGTGAATCACAGCAGAGTTTTCCTCCAGGAGTGCAATCTGACAGTAGCACCTCTACTCAATCTATGACGGCCAATATTTATGGGAGTTCAATACCTTCTATGACACCAACTGCTCAACCTACATATGCCACATCTTACGGTTATCCGCCTTACTATGGTGCAGTTCCTCCTCCACCTCCCCCACCTGCCCCTGCTCCTATCTCCACTTCAGATCATATGCATTGGGCTACCAATCCTTCTGTACCACCCCCGGCATCAACTGCAGAGAAGACAACATACAGTGCAGATCAATCTCAGAGCATAGGAAATGTGCCTTGGGCCACAAATGCTCCAATGCCGCCACCCCCTGCTTCAACTGCAGAGAAGACAACATACGGTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA | 2472 | 0.4846 | MDALESNPTPPPFLPPDHNPPPPPPESFESDLQKPYEQTVNFDYQNSLKTLASDGQNFSGQPQSANGNGHVNGLDNSQGGADSNSNSKPLSARPLISENAGTNNTQSGTDKDHSGGEEETTSKRRRRSRWDPQPDSNDQSGGEAGAGTKRRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKQNPTLAISSGNSGSNPPWANNSGSSGGTSQPGLGANPIKKEIDDTNLYIGYLPPTLDDDALIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADIQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPIGAYPSQQYAGGGPLGAPPNGSFTGAPVPWGPPVPPPYATYAPPPPGSTMYPPIQGQSIPPYGVQYPPVQTGPPGAPSQPTTSSESQQSFPPGVQSDSSTSTQSMTANIYGSSIPSMTPTAQPTYATSYGYPPYYGAVPPPPPPPAPAPISTSDHMHWATNPSVPPPASTAEKTTYSADQSQSIGNVPWATNAPMPPPPASTAEKTTYGADSEYEKFMAEMK | 823 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 198 | 217 | - | - | |
| Accr13g01554 | 823 | CDD | KH-I_BBP | 261 | 354 | - | - | |
| Accr13g01554 | 823 | ProSiteProfiles | Type-1 KH domain profile. | 277 | 349 | - | - | |
| Accr13g01554 | 823 | FunFam | splicing factor 1 | 382 | 435 | - | - | |
| Accr13g01554 | 823 | Gene3D | - | 176 | 254 | IPR047086 | - | |
| Accr13g01554 | 823 | Gene3D | - | 465 | 582 | IPR012677 | - | |
| Accr13g01554 | 823 | Pfam | Splicing factor 1 helix-hairpin domain | 151 | 258 | IPR032570 | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 111 | 133 | - | - | |
| Accr13g01554 | 823 | SMART | c2hcfinal6 | 409 | 425 | IPR001878 | GO:0003676|GO:0008270 | |
| Accr13g01554 | 823 | SMART | c2hcfinal6 | 383 | 399 | IPR001878 | GO:0003676|GO:0008270 | |
| Accr13g01554 | 823 | Gene3D | K Homology domain, type 1 | 259 | 381 | IPR036612 | GO:0003723 | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 307 | 327 | - | - | |
| Accr13g01554 | 823 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 262 | 388 | IPR036612 | GO:0003723 | |
| Accr13g01554 | 823 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 501 | 570 | IPR000504 | GO:0003723 | |
| Accr13g01554 | 823 | SUPERFAMILY | Retrovirus zinc finger-like domains | 380 | 426 | IPR036875 | GO:0003676|GO:0008270 | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 677 | 704 | - | - | |
| Accr13g01554 | 823 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 499 | 577 | IPR000504 | GO:0003723 | |
| Accr13g01554 | 823 | Gene3D | - | 382 | 435 | - | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 32 | 110 | - | - | |
| Accr13g01554 | 823 | ProSiteProfiles | Zinc finger CCHC-type profile. | 410 | 424 | IPR001878 | GO:0003676|GO:0008270 | |
| Accr13g01554 | 823 | FunFam | splicing factor-like protein 1 | 479 | 581 | - | - | |
| Accr13g01554 | 823 | PANTHER | RNA-BINDING PROTEIN RELATED | 115 | 615 | IPR045071 | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 458 | 486 | - | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 755 | 790 | - | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 458 | 491 | - | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 746 | 812 | - | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 603 | 629 | - | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 145 | 161 | - | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 649 | 704 | - | - | |
| Accr13g01554 | 823 | SUPERFAMILY | RNA-binding domain, RBD | 495 | 588 | IPR035979 | GO:0003676 | |
| Accr13g01554 | 823 | FunFam | splicing factor-like protein 1 | 254 | 382 | - | - | |
| Accr13g01554 | 823 | SMART | kh_6 | 262 | 354 | IPR004087 | GO:0003676 | |
| Accr13g01554 | 823 | Pfam | KH domain | 277 | 325 | IPR004088 | GO:0003723 | |
| Accr13g01554 | 823 | SMART | rrm1_1 | 500 | 573 | IPR000504 | GO:0003723 | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 8 | 29 | - | - | |
| Accr13g01554 | 823 | MobiDBLite | consensus disorder prediction | 1 | 163 | - | - | |
| Accr13g01554 | 823 | ProSiteProfiles | Zinc finger CCHC-type profile. | 384 | 398 | IPR001878 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr13g01554 | Accr-Chr13 | 26340171 | 26342642 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr13g01554 | 499 | 630 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 29.252 | 4.50e-11 | 64.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr13g01554 | K13095 | - | qsa:O6P43_029889 | 1154.43 |