Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01540 ATGATGGATCATAATAAAATTTCTCTCTTCCTTGAAATTCATATTGCTTGCTTTCTTTTGTGTTCATCATACCAGCACACTTCAGGGCTTACAGAAACTGCAGCTCTTCTCAGATGGAAGCAAAGTCTTCCATACCAACCAATTCTGGATTCATGGGTTTCGCCTCCTCAAGCGAATTCCAGTGTAGCCCAAACCCCATGTTCATGGCGTGGAATAAGGTGTGATTCTCAAGGAAGTGTGGTCGAACTCAACTTGAATAACACTGGTCTCAAAGGTACCCTTAAAAACTTGAATTTCTCAGCTTTCCCAAATCTTGTTCTTCTTAATCTCAAATTTAATCAGCTCACTGCTCCCATACCAGAATCAATTGGGTTTCTCTCAAAACTACAATACCTGGATCTTAATCGTAATTATCTCAATGGCACTATACCTCTCTCTCTTTCTAATCTTACTCAACTTTATGAGCTTGACCTTTCGCAGAATTATATAACTGGGATATTGGATCCTCGTCTATTCCCTGATGGATCTGATGAACCCAAAACAGGTTTGATTGGGATAAAAAATCTTGTGCTTCAAGGCTTGCTCCTTGGAGGCAAAATTCCAAATGAAATAGGCAATTCGAAACAGTTGACTATTCTAGCTCTATATCAAAACAGCTTTTACGGTCCTATACCTTTTTCTTTAGGGAATTGTACACATCTAAACATTCTCTCTTTGGCTGCAAACAGCTTCTCAGGTACAATTCCCCCTATTCTTGGCAGATTACCAAATCTAACTGATGTTCGCGTATTTTTCAACAATTTCTGTGGTCCTTTACCACAATGGTTTCAAAATCGTTCTTTTACTATGCTCAATCTTTCTAATAACAACTTCACTGGCCATTTACCACCACAAGTATGCAAAGATGGTAGTTTACTTGAGTTCACTGCAGCTTACAATAGTTTCACTGGTCCAATCCCCATGAGCCTTAGAAACTGCACATCTTTAGTTAGACTTCGTCTTGAACATAACCAGTTGACAGGAGATGTAGACAAGGATTTTGGAGTTTATCCCAATCTTACCTACATTGACCTCAGCTACAATAGACTTCAGGGTATGCTCTCTACAAATTGGGGTTCCTGCAAGAGCTTGCAAAATCTTAACTTGGCTGGAAATTCAATAGTGGGAATTTTACCTGGTGAGATCTCTCAGTTGAAGCACCTACAAAAGCTTGACTTGTCTTCCAACTTAATATATGGTGAGATTCCTCGTCAAATTGGAATTACCTCAAGCTTGTACTATCTACATCTGGGTGGCAACAATCTTTCAGGTTTGATCCCAAAAGACATTGGGAAGCTTTCTAGTTTGCAGTCTTTAGATCTGTCAATGAATAGCTTGAGGGGATCTATCCCTTATCAAATAGGTGATTGCTATGAGTTGCTGAATTTAAATCTTAGCAACAATTACTTTACTGGCAAAGTCCCATACCAAATAGGAAATCTTGTGGCTTTACAAGATTTTTTGGACTTGAGTTACAATTCACTTTCTGGAGAAATCCCCGTTGATTTCAGTAAACTCAACAAGTTGATAAGCTTGAACATGTCTCGCAATAATTTGTCAGGTCCCATCCCTAATTTCTTAGCAACAATGTTAAGCTTGTCAAGCATCAATCTGTCCCACAACAATTTGAAAGGTCCTGTACCAGATGGTGGAATTTTTAATTCTACTAATCCAGTGGATCTAAGTAACAATAAAAATTTATGTGGGAGGATCCAAGGTTTAAAACCTTGCAACATTTCAACCACAAAATCACATGGTGGAACCAACAGAAAGAAAATGGTGATAGCTATCACTTCTTCTTTGGCCGTGGCATTGTTTTTGTTGGGAGTGATTGGGAATTTCATTGTTCTCTATAAGAGAAACTTAAGAGCTGTTGAACATAACACCGGACACAATGAAGAAAATCTATTCTTCATATGTCACTCTGATGGCAGCATTATGTATGAAGACATAATTGAAGCAACTGGGAACTTTGCTGAAAAATACTGCATTGGGGAGGGAGCTTTTGGTAAAGTTTACAAATTGATATTACCAGGGGACAAAAAATTTGCTGTGAAAAAGTTGATATGTGAAGCTGATGACCTTGATATGGAGAGTATAAAAGCTTTCAAGAGTGAGATCAAAGCCTTGACGGAAACACGACACCGTAACATTGTAAAGTTGTACGGGTTTTGCAAGCGGAGGTCACACACGTTTCTGATTTACGAGTACATGGAAAGAGGGAGCTTAGCTGATATACTTAGAAATGATAAAGAAGCATCAGAGTTGGATTGGTCAAAGAGGTTTAATACTATCTTGGGTGTAGCACAAGCTTTATCTTACATGCACCATGATTGTGAGCCACCTATTGTTCATAGAGACATATCAAGCAAAAACATTTTACTATCTTCAAATCTTGAAGCTCATGTCTCAGATTTTGGCACAGCAAGGTTCTTGAAGGTTGATTCATCAATTTGGACAACATTTGCTGGCACGTATGGCTATGCCGCTCCGGAGCTTGCGTACACAATGGCAGTGACAGAGAAAGTTGATGTGTATAGCTTTGGTGTTTTGGCTATTGAGGTGCTTATGGGAGAGCATCCTGGAGATTTAATGTCCCGTAACCTAAATGATGGCATTAATCAGATCAACTTCAAAGAGATTCTGGATTCGCGTTTATCATCAACGAATCAGCAAAACTTGAAGAAATTTGCTCTGATTTGGGATCTAGCTCTTTCATGCTTACAAGCAAACCCTCAGTCTCGTCCAACCATGCGAGGTGTCGCCCAGTTGATGGAAAAGGAGAGTTCTCATAAAACATGA 2841 0.3907 MMDHNKISLFLEIHIACFLLCSSYQHTSGLTETAALLRWKQSLPYQPILDSWVSPPQANSSVAQTPCSWRGIRCDSQGSVVELNLNNTGLKGTLKNLNFSAFPNLVLLNLKFNQLTAPIPESIGFLSKLQYLDLNRNYLNGTIPLSLSNLTQLYELDLSQNYITGILDPRLFPDGSDEPKTGLIGIKNLVLQGLLLGGKIPNEIGNSKQLTILALYQNSFYGPIPFSLGNCTHLNILSLAANSFSGTIPPILGRLPNLTDVRVFFNNFCGPLPQWFQNRSFTMLNLSNNNFTGHLPPQVCKDGSLLEFTAAYNSFTGPIPMSLRNCTSLVRLRLEHNQLTGDVDKDFGVYPNLTYIDLSYNRLQGMLSTNWGSCKSLQNLNLAGNSIVGILPGEISQLKHLQKLDLSSNLIYGEIPRQIGITSSLYYLHLGGNNLSGLIPKDIGKLSSLQSLDLSMNSLRGSIPYQIGDCYELLNLNLSNNYFTGKVPYQIGNLVALQDFLDLSYNSLSGEIPVDFSKLNKLISLNMSRNNLSGPIPNFLATMLSLSSINLSHNNLKGPVPDGGIFNSTNPVDLSNNKNLCGRIQGLKPCNISTTKSHGGTNRKKMVIAITSSLAVALFLLGVIGNFIVLYKRNLRAVEHNTGHNEENLFFICHSDGSIMYEDIIEATGNFAEKYCIGEGAFGKVYKLILPGDKKFAVKKLICEADDLDMESIKAFKSEIKALTETRHRNIVKLYGFCKRRSHTFLIYEYMERGSLADILRNDKEASELDWSKRFNTILGVAQALSYMHHDCEPPIVHRDISSKNILLSSNLEAHVSDFGTARFLKVDSSIWTTFAGTYGYAAPELAYTMAVTEKVDVYSFGVLAIEVLMGEHPGDLMSRNLNDGINQINFKEILDSRLSSTNQQNLKKFALIWDLALSCLQANPQSRPTMRGVAQLMEKESSHKT 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01540 946 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 278 594 - -
Accr13g01540 946 Gene3D Ribonuclease Inhibitor 253 593 IPR032675 -
Accr13g01540 946 Pfam Protein kinase domain 674 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01540 946 SUPERFAMILY RNI-like 82 388 - -
Accr13g01540 946 Gene3D Ribonuclease Inhibitor 30 174 IPR032675 -
Accr13g01540 946 Pfam Leucine rich repeat N-terminal domain 32 75 IPR013210 -
Accr13g01540 946 SMART LRR_typ_2 150 174 IPR003591 -
Accr13g01540 946 SMART LRR_typ_2 398 422 IPR003591 -
Accr13g01540 946 SMART LRR_typ_2 446 470 IPR003591 -
Accr13g01540 946 SMART LRR_typ_2 543 568 IPR003591 -
Accr13g01540 946 SMART LRR_typ_2 102 126 IPR003591 -
Accr13g01540 946 SUPERFAMILY L domain-like 308 582 - -
Accr13g01540 946 FunFam MDIS1-interacting receptor like kinase 2 751 944 - -
Accr13g01540 946 ProSitePatterns Tyrosine protein kinases specific active-site signature. 796 808 IPR008266 GO:0004672|GO:0006468
Accr13g01540 946 Gene3D Transferase(Phosphotransferase) domain 1 751 946 - -
Accr13g01540 946 ProSitePatterns Protein kinases ATP-binding region signature. 677 700 IPR017441 GO:0005524
Accr13g01540 946 Gene3D Phosphorylase Kinase; domain 1 633 750 - -
Accr13g01540 946 Pfam Leucine rich repeat 351 411 IPR001611 GO:0005515
Accr13g01540 946 Pfam Leucine rich repeat 103 163 IPR001611 GO:0005515
Accr13g01540 946 Gene3D Ribonuclease Inhibitor 177 252 IPR032675 -
Accr13g01540 946 FunFam Nuclear pore complex protein NUP107 30 172 - -
Accr13g01540 946 ProSiteProfiles Protein kinase domain profile. 671 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01540 946 PANTHER LEUCINE RICH REPEAT KINASE 2 279 942 - -
Accr13g01540 946 FunFam Leucine-rich repeat receptor protein kinase MSP1 634 750 - -
Accr13g01540 946 SUPERFAMILY Protein kinase-like (PK-like) 651 937 IPR011009 -
Accr13g01540 946 PRINTS Leucine-rich repeat signature 446 459 - -
Accr13g01540 946 PRINTS Leucine-rich repeat signature 353 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01540 Accr-Chr13 25549237 25552199 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01540 15 870 Receptor kinase-like Gene Family AT4G08850 40.461 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr13g01540 Pkinase 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01540 - - aprc:113866080 1185.63