Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01530 ATGATGGCCAGTTTCAGAGTTCTGTATCTATACTTCTTGCTACTCTGCTTCGTAGAGTCACTCACTTCACGAGACACGATCACTGAAGGAAACTTCATTAGAGATGGCGAGACTTTAGTTTCCTCAAACAGGTTTTTCGAACTTGGATTCTTCAGCCCTGGCTCTTCAACTCTCAGATACTTGGGAATATGGTACAGGGAATCTCCTTCCACAGTCTTCTGGGTCGCCAACCGAAACACATCCATCAACAACGTTAATGGAAAGGGCCTTTTACGATTAAATGATCAAGGGGTTCTTCTTCTTCTTGATGCTAAAAACAACACCATGTGGTCTTCCGACAATTCGTCAACCACTACCAGAATCAAAGCGTACAACCCTTTTGCCCAGCTCTTGGATTCGGGGAATCTGGTGGTGAAAAATGACGCCTTCGACCGATTGTGGCAGAGTTTTGATTATCCTTGTGATACCTTGATGCCTGGAATGAAGCTTGGGTGGGATCAAGAAACGGGTCTGGATAAAGTTCTGTCATCTTGGAAAAGCTCATATGATCCAGGTCAAGGAGATTACATATACAAAATAGACCGTAAAGGGTATCCACAATTATTTGCACTGAGAAGTTCCAAAGTGATGTTTAGACCTGGGTCATGGAATGGCATCACTCTTACATGGCTTCCAAATCATAATCCAAATCCTATATTTACTACTGAGTTTGTGGTGAATGAAAAAGAGGTGTACTTTACCTCTGAGCTGAGAAATAATTCGATTTTCTCCAGATTTGCAGTGAACCCGTCTGGGATTGGGCAGCGTTTTGATTGGGTAATTCAAACAAGCAGCTGGCAGTTATTGAGCACTGGTTCTATTGACCAGTGTGAAAATTATGCCTTGTGTGGTGCAAATTCTATCTGCAACATTAGTAACAATCCTGTTTGTGAATGCCTGAGAGGTTATGAACCCAAGAATTTTAAGGAATGGAATGTGTCTAATTGGAACAGTGGCTGCACTAGAAGGGTCTCTTTGGACTGTGGTGGTGGTGATGGGTTTAAGCAGTACACAAGCATCAAGTTACCAGACACCTCTTCTTCATGGTACAACACGACCATGAACCTTAAGGAATGTAAGAAAACATGTCTGCAAAACTGTTCTTGTGCAGCTTATTCGAATTTGGATATACGAGGTGAAGGAAGTGGCTGCCTCGTATGGTTTGATCACCTATTGGACATGAGACAATTTCCTGCAGGGGGACAAGACCTCTATGTACGACTTCCTGCTTCAGAGCTAGATCATTTTAGGGATGAAGGCCGTGGGAGCATTGGCAAGAAGAAGCTAGCAGGAATTGTGGTTGGCTGTGCAATACTTGCAATGAGTTTCATGATTCTTGGATTAACTTTAATTGCAAGGAAAAGCAAACCTCGAAATTCTGGGAAAGAAGTCATGGATATTCCAACGTTTGATTTGTCAGTCATAACTAAGGCTACTGATAATTTTTCTACTATTAACAAATTGGGTGAAGGTGGTTTTGGGCCAGTATACAAGGGTACTTTAGAAGATGGACAAGAGTTAGCTGTGAAAAGGTTGTCAGCAAAATCAGGGGACGAGAAGTTGTTGATTTATGAATATATGTCAAATAAGAGCTTGGACTACTTTATTTTTGATGTAACTCGTAGCAACCTGTTGGATTGGCCTAAGCGTTGGCATATTATTCATGGCATTGCTCGAGGACTTCTCTATCTTCATATGGATTCTAGATTGAGAATAATTCATAGAGATCTTAAAACCAGCAATATTTTGCTAGATGCTTACATGAATCCAAAAATATCAGATTTTGGTCTAGCTCGTACATTTTGGGATGATCAGGTTGATGCGAACACTAACAAAATTGTCGGAACATATGGATATATGCCTCCTGAATATGTTTTGCATGGATGTTTTTCAATGAAATCCGATGTCTTTAGCTTTGGTGTAATAGTGCTAGAAATTGTTATTGGGAAGAAGAACCGGGGATTTTTAGACCAAGAATACGGCCTTAATCTTCTTGGACATGCATGGAGATTGTGGATCCAAGGAAGAGCAATGGAACTGTTGGATGAATGTTTAAGGGAAAGTTACAATGAATATGAAGTCCTAAGATGCGTACAAGTAGGACTATTGTGTGTTCAACAGAAAGTTGAAGATAGGCCTGATATGTCAACTGTGATTCTAATGTTAAATGGTGAAAAGTTATTGCCACAACCAAAAGTTCCTTGTTTCTACACTGCTGGTGATGTCTTTGCTGATCCAAGCCACAGAATGTCTCAAAATGAAATTTCTCAAACCATGCTAGAGGGAAGATGA 2331 0.4063 MMASFRVLYLYFLLLCFVESLTSRDTITEGNFIRDGETLVSSNRFFELGFFSPGSSTLRYLGIWYRESPSTVFWVANRNTSINNVNGKGLLRLNDQGVLLLLDAKNNTMWSSDNSSTTTRIKAYNPFAQLLDSGNLVVKNDAFDRLWQSFDYPCDTLMPGMKLGWDQETGLDKVLSSWKSSYDPGQGDYIYKIDRKGYPQLFALRSSKVMFRPGSWNGITLTWLPNHNPNPIFTTEFVVNEKEVYFTSELRNNSIFSRFAVNPSGIGQRFDWVIQTSSWQLLSTGSIDQCENYALCGANSICNISNNPVCECLRGYEPKNFKEWNVSNWNSGCTRRVSLDCGGGDGFKQYTSIKLPDTSSSWYNTTMNLKECKKTCLQNCSCAAYSNLDIRGEGSGCLVWFDHLLDMRQFPAGGQDLYVRLPASELDHFRDEGRGSIGKKKLAGIVVGCAILAMSFMILGLTLIARKSKPRNSGKEVMDIPTFDLSVITKATDNFSTINKLGEGGFGPVYKGTLEDGQELAVKRLSAKSGDEKLLIYEYMSNKSLDYFIFDVTRSNLLDWPKRWHIIHGIARGLLYLHMDSRLRIIHRDLKTSNILLDAYMNPKISDFGLARTFWDDQVDANTNKIVGTYGYMPPEYVLHGCFSMKSDVFSFGVIVLEIVIGKKNRGFLDQEYGLNLLGHAWRLWIQGRAMELLDECLRESYNEYEVLRCVQVGLLCVQQKVEDRPDMSTVILMLNGEKLLPQPKVPCFYTAGDVFADPSHRMSQNEISQTMLEGR 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01530 776 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Accr13g01530 776 SMART serkin_6 495 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01530 776 CDD PAN_AP_plant 337 422 - -
Accr13g01530 776 Pfam Protein tyrosine and serine/threonine kinase 531 732 IPR001245 GO:0004672|GO:0006468
Accr13g01530 776 CDD B_lectin 31 153 IPR001480 -
Accr13g01530 776 Pfam D-mannose binding lectin 71 179 IPR001480 -
Accr13g01530 776 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Accr13g01530 776 Pfam PAN-like domain 341 407 IPR003609 -
Accr13g01530 776 Gene3D Transferase(Phosphotransferase) domain 1 540 742 - -
Accr13g01530 776 SMART blect_4 30 153 IPR001480 -
Accr13g01530 776 PIRSF SRK 1 532 IPR024171 GO:0004674
Accr13g01530 776 PIRSF SRK 527 776 IPR024171 GO:0004674
Accr13g01530 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Accr13g01530 776 SMART ntp_6 342 421 IPR003609 -
Accr13g01530 776 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Accr13g01530 776 Gene3D Phosphorylase Kinase; domain 1 466 539 - -
Accr13g01530 776 Gene3D Hepatocyte Growth Factor 338 418 - -
Accr13g01530 776 ProSiteProfiles Protein kinase domain profile. 426 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01530 776 SUPERFAMILY Protein kinase-like (PK-like) 478 747 IPR011009 -
Accr13g01530 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 150 - -
Accr13g01530 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 540 743 - -
Accr13g01530 776 ProSiteProfiles Bulb-type lectin domain profile. 24 151 IPR001480 -
Accr13g01530 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 184 IPR036426 -
Accr13g01530 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 340 421 - -
Accr13g01530 776 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 726 - -
Accr13g01530 776 Gene3D - 19 150 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01530 Accr-Chr13 24619547 24622837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01530 423 750 Receptor kinase-like Gene Family AT4G23190 46.612 1.95e-100 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr13g01530 PK_Tyr_Ser-Thr 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01530 - - cave:132173741 858.981