Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01463 ATGTCCTCCGCTGATCCTTACGAAATCATTGACGATGACGAAGCGTTCGATTGGGATGCTGCTGCACGAGAAATCGACGTGGCTTGCAAAGCCACGAAGCCCTCCACTTCACTTGGTGATACTTCTTCCAATTCGCGCCAAATGACTTTAGATAAATTTTTGGGTAAGAAGGAAACCCCAAGACCTCAACTTGAGGATCCCAAGATCGGCAAGAATGAGCAAGATTGCTTCGCAGGTGATGAAGGGGCGAGCTGCATTGAGGTTGATACTGAGGCAGTCAAAACTTGGATATACCCAGTCAATGTTCCTCTTCGTGACTACCAATTTGCTATAACAAAATCTGCTATATTTTCAAACACATTGGTGGCGTTGCCTACAGGACTTGGGAAAACTCTGATTGCTGCTGTGGTCATGTACAACTATTTCCGATGGTTTCCACGAGGAAAAATTGTCTTCACTGCTCCATCTCGGCCACTCGTCATGCAACAGATAGAAGCTTGCCATAATATTGTAGGAATACCTCAAGAGTGGACAATTGATATGACGGGTCAACTAAGCCCTGCTAAAAGAGCATGCTTTTGGAAAACCAAACGAGTGTTCTTTGTCACTCCACAAGTGTTGGAAAAAGATATTCATGCAGGTAAATGTTTGGTGAAATACTTGGTATGTTTGGTAATTGACGAAGCCCACAGAGCAATGGGAAATTACTCTTATTGTGAAGTAGTTCGTGAGTTAATGGCTGTGCCAGTGCAACTGCGAATATTGGCTTTAACTGCAACACCTGGAGCAAAGCAGCAAACAGTTCAGCAAGTCATTGATCATCTGCACATCTCCAAACTTGAATATCGCAATGAAAATGATCCTGATGTTATTTCATATGTTCACAAAAGGAAGATAGAGTTGATTCAGGTTGCAATGGGTCAAGATGCTGTAGAAATAAACCAGCAGCTTTTGGAAGTAATACGCCCAATTGTAGGTCGGCTCTCAGCAATGGGAGTTCTCAAGAATAGAGATTACCGCACTTTGAGCCCCTGTGAATTACTTGAAATACGGGAAAAGTATCGTCAAGCACCTCCACATGATCTTTCCAATGTCAGCAATGGAGATGTTGAGGGCTATTTTGGTGTTCTTATTAGTCTTTACTACATCCATAAGCTACTTTCAAGTCATGGAATCAGGCCAGCGCACGAGATGCTTGAAAGAAAATTGAAGCAAGGATTTTTCGCAAAATATATGAGCAAAAATGAAGTATTTCTGAAAGCAAGGATGTTAATGCAGCAAAACTTATCTCATGGAGCACCAAGTCCCAAGTTGTCCAAAATGCTTGAAATACTGCGGGAACATTTCAAAGCCAATGATCCTCAGAGCTCTAGGGTTATTATTTTCTCAAATTATAGGGAAAGTGTGAGGGATATAATGGATGCACTAGCAAGTATAGGGGAACCAATCAGAGCTACCCAGTTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGTCAGTCCCAAAAAGTCCAACAGGCAGTGCTGCAGAAATTCCGTTCTGGAGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTTGTAGCTTTTGATGCTAATATCTCACCACTAAGAATGATTCAGCGCATGGGGAGAACTGGAAGAAAGCATGATGGACAAGTTGTAGTTTTAGCTTGTGAAGGTACTGAACTGAAGGGATACTTGCGGAAACAAGCCAAGAGCAAGGCTATTAGTAAACACATGCGAAATGGAGGCATAAATAGCTTCACTTTTCATCCTAGTCCCAGGATGATTCCCCACGTCTTTAAACCGGAGGTTCAGTTTGTTGAGCTTTCAATTGAGAAATTTGTTTCTCGTGAGAAGAAAGTAAAAGATGACTCCATTCAAATACATTCATCCATTGGCAAACTTACAGTTGCTGAGAATAATATACTTGCGAAGTATTTTCCCACCACTGGTGAAAATAGATGGAAGCCATCTCTTATTGCCTTTCCTTACATCCAGACATATCCTTCTAGAACACATAAAGTGAATCATTCGTGCAGAGCAATAATGCTCATTGATTTGATGCAACGGCTGCAAGGGAAAGCGTCATTCTTAGGAAATTGTAAAACTTCCAATCTTCAGGATGGCCTATGTATAGAAGTTAGTAATGCATTCGACTTGGACAAGATTGATGAAGTTAGATCAGGGATTCAAACTGAAGACTTTGTTGATCTAATTGCACCTGATAATCTTGTGGAAGAACAGAGATCGCCTAGTACAAGTTGCATAAAGAAGGATGATATACGGTCATCTTGTTTTATTGACTTAGATAAAGATAAAGAGACAACACATGAGTGTGAAGAGACAGTTCCTGACACTCCAATTGCTAAGACAGTCATGTCAAATGAAGGACATAGTGATGGCGGAACACCTGATTTTGCTCAGTTCAAGATATCTTTGTTGCCAGATGATGCATTCAATGATGGCATCAACGAGTCCCAGTGTAGTCCACGTTTGACCAGTTTAATTAAAAGTGGTTTTGTTCCAGAGTCTCCCATTGATGAGAGGGGGTCATCAAGAAGTCAGCTTGTCGTTCGGGACTGTGAACCACTTGTACATCTCCAGATGGAACAACAAATTACCTCAAGTTTAGGGGCAAATGAAAATGCCATTATTGATGACGCCACAAATGTAAATAATGCATCTATCGATCCTGCTAATAATGAAACTCAAGCCCTTTTATTCGAACGGAAGAGTTGTGCAATTAAAAGAGGTCAGGTCTTTCGTTCTCCTACAGTGGAGGAAGGCCAAAATCCTTTTGCAGATATTACAAACCGAGGCTTTAGTGAAGAATCACCTTTATGTTGTGGAGATGTTGCTGAAAGTGTCAAGCCAGCATGTAAATTTAAAAGGTTGCGTAAAGCTGATGGTGGTAGGCGTCATAGGAAAGAGAAAAGAAGGAAGGATCATGTTGTTTCGACAGAAAATCTTGGCAAAATTTCATCAACCCCTGATTCTACACACAAAAAACACGGCCAAGGTAGAAGGAAATCATTGCACAATGCCAGAGTCTTCATTGACGACGAGGCTGAGGTATCTTCAGAAGCTGATGTTTCTAATGATGAAGACGGTGAGGATGACAGTTCAATGGATAGTTTCATAGATGACAGGATGAACCCTACAGCAGCCACTCAGTCTAGAGCTAGTGGAATAGACATGATGGCAATATACAGGCGTTCTTTGCTCAGTCAACTACCAGCTGAAGGAGGGACCAACAGTTCTGCTACATTTAGTCCAGACTATGTGTCATCCATGACTATAATTTGTGAAAATGGGGTTTCTTCTGGCAGCATACCAAGACATCTTCAGACACCTCAAATTGAGCCAACAAATCAGTCAGCTTCCAAGGATTTGCAATCAGTTGAAGTCAACCAAATCACCTCAGAAGCCATACCTTCAAGTAGTCTTTCCATTGAAACCACGACACAGATGAGAAGTCGAAAAAGAAAATTGTCATTTCATCAAGCCGGATTTCCAAGTGCTAATCTTGAGCAGGAATTTGCACGTCAATCAAATGAAGAACCTATGTATGCTTATGCAACTAAGGATATTCTCAGTGATGATCACATTTTTGATGATATTGATCTTGATGAGTTGGAGGCTCAAGCAGCTTCTCTTCTTAAACAAAAATCAGATTTATCAGCACAGAAGCCAGATACACATACAATACCTCAATCTCACTTGCATGATCCTCACCTTTCCAGCCCATCGTTCGACCTAGGGATATGA 3807 0.4119 MSSADPYEIIDDDEAFDWDAAAREIDVACKATKPSTSLGDTSSNSRQMTLDKFLGKKETPRPQLEDPKIGKNEQDCFAGDEGASCIEVDTEAVKTWIYPVNVPLRDYQFAITKSAIFSNTLVALPTGLGKTLIAAVVMYNYFRWFPRGKIVFTAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQLSPAKRACFWKTKRVFFVTPQVLEKDIHAGKCLVKYLVCLVIDEAHRAMGNYSYCEVVRELMAVPVQLRILALTATPGAKQQTVQQVIDHLHISKLEYRNENDPDVISYVHKRKIELIQVAMGQDAVEINQQLLEVIRPIVGRLSAMGVLKNRDYRTLSPCELLEIREKYRQAPPHDLSNVSNGDVEGYFGVLISLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYMSKNEVFLKARMLMQQNLSHGAPSPKLSKMLEILREHFKANDPQSSRVIIFSNYRESVRDIMDALASIGEPIRATQFIGQSSGKTMKGQSQKVQQAVLQKFRSGAYNVIVATSIGEEGLDIMEVDLVVAFDANISPLRMIQRMGRTGRKHDGQVVVLACEGTELKGYLRKQAKSKAISKHMRNGGINSFTFHPSPRMIPHVFKPEVQFVELSIEKFVSREKKVKDDSIQIHSSIGKLTVAENNILAKYFPTTGENRWKPSLIAFPYIQTYPSRTHKVNHSCRAIMLIDLMQRLQGKASFLGNCKTSNLQDGLCIEVSNAFDLDKIDEVRSGIQTEDFVDLIAPDNLVEEQRSPSTSCIKKDDIRSSCFIDLDKDKETTHECEETVPDTPIAKTVMSNEGHSDGGTPDFAQFKISLLPDDAFNDGINESQCSPRLTSLIKSGFVPESPIDERGSSRSQLVVRDCEPLVHLQMEQQITSSLGANENAIIDDATNVNNASIDPANNETQALLFERKSCAIKRGQVFRSPTVEEGQNPFADITNRGFSEESPLCCGDVAESVKPACKFKRLRKADGGRRHRKEKRRKDHVVSTENLGKISSTPDSTHKKHGQGRRKSLHNARVFIDDEAEVSSEADVSNDEDGEDDSSMDSFIDDRMNPTAATQSRASGIDMMAIYRRSLLSQLPAEGGTNSSATFSPDYVSSMTIICENGVSSGSIPRHLQTPQIEPTNQSASKDLQSVEVNQITSEAIPSSSLSIETTTQMRSRKRKLSFHQAGFPSANLEQEFARQSNEEPMYAYATKDILSDDHIFDDIDLDELEAQAASLLKQKSDLSAQKPDTHTIPQSHLHDPHLSSPSFDLGI 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01463 1268 CDD DEXDc_FANCM 102 283 IPR044749 GO:0005524
Accr13g01463 1268 FunFam ATP-dependent RNA helicase, putative 425 595 - -
Accr13g01463 1268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 279 IPR014001 -
Accr13g01463 1268 CDD FANCM_ID 311 420 IPR039686 GO:0006281|GO:0043138
Accr13g01463 1268 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 437 605 IPR001650 -
Accr13g01463 1268 MobiDBLite consensus disorder prediction 980 1062 - -
Accr13g01463 1268 MobiDBLite consensus disorder prediction 1236 1258 - -
Accr13g01463 1268 Coils Coil 1222 1242 - -
Accr13g01463 1268 FunFam Fanconi anemia, complementation group M 99 294 - -
Accr13g01463 1268 Gene3D - 430 595 IPR027417 -
Accr13g01463 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 574 IPR027417 -
Accr13g01463 1268 MobiDBLite consensus disorder prediction 1037 1056 - -
Accr13g01463 1268 Pfam Type III restriction enzyme, res subunit 117 261 IPR006935 GO:0003677|GO:0005524|GO:0016787
Accr13g01463 1268 Gene3D - 100 294 IPR027417 -
Accr13g01463 1268 MobiDBLite consensus disorder prediction 1236 1268 - -
Accr13g01463 1268 SMART helicmild6 470 561 IPR001650 -
Accr13g01463 1268 CDD SF2_C_FANCM_Hef 435 569 - -
Accr13g01463 1268 Pfam Helicase conserved C-terminal domain 442 560 IPR001650 -
Accr13g01463 1268 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 6 1246 - -
Accr13g01463 1268 Gene3D hef helicase domain 308 429 - -
Accr13g01463 1268 MobiDBLite consensus disorder prediction 52 71 - -
Accr13g01463 1268 SMART ultradead3 100 300 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01463 Accr-Chr13 22466587 22487315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01463 460 559 Eukaryotic Initiation Factors Gene Family AT3G13920 29.000 3.43e-07 52.4