Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01424 ATGCCTACATCAGTACTTGATGGTCAGTCTGGAGAAAAATTGCTTCCAAAGGCATTTGCAATTCGTGATTACCCGCCTGGGGTTGGACCAAATGCTGCAAGAATCCATGTCAAACCTAAAGAAGATTCTACTAAGGGTGGTGAGGCTAATCTTCAACACTCTGCCACTAGAAGATTTGTTTCTGCTATTAGAGACTATCCTCCTTATTGTGGACGTAATTCTCGGGGACTGAGTAAGGCAGATGTTTCCAAGCTCATGCAGAGGCATTTGACTGGCGTTAGGGAAGAAAGGAAGAGAAGACTTGATTACCTCAAACGGGGTGATGGATCTAAAGCTGTGATGATGACTAAAGACTCTCTGAATCATTCGAACATGAAGGTTTTTAAAAAGAAAGAAGGAAATGCTGCTTCTGGAGCTACGGGTAGACTTGCAGTCTTAGGAAAAAATGGTCGTGATACCAATTATAGCAGAAAATTTTCTGATGGCCACAGATCATATGGTGTAAATATTCCACTTCTGCGTCATCGTAATTTGAGCATTCACAACAATGACTCAGTTGTTGCACGAATTACTTTAAGAGACACACTGCGCTCTTTCCAAACGCTTTGTAGAAAATTGTTGCAAGAAGTAGAAGCACAGTCAAAAGGCCAAGCAAAAATTTGGAAGAGGATTGATTTAGAGGCAGCAAACATCCTTAAAAGGGAAGGAAAATATATTAATGAAGGCAAGATCTTTGGTTCTGTTCCTGGGGTTGAAATAGGTGATGAGTTTGACTATAGAGTGGAGCTTAATTTAGTTGGTCTACATCGCAATATACAGGCTGGCATAGATTATGCAACGCACAATGGTGAGCATCTTGCAACTAGTATTGTTGCATCAGGGGGATACAATGATGAGTTGGATAATTCAGGTGTTTTGATTTATTCAGGGCACGGGGGGAATGTGATGTCCAAAAAGAAAGAACCTGAAGACCAGAAGCTTGAGCGGGGTAATCTTGCTTTGAAGAACAGCAGCAAGAAAAAGAATCCTGTTAGAGTGATACGTGGTGCTTTCTTTGGAGGTGGAAGTCGTAGGACATTTGTGTATGATGGACTGTATGAAGTTGAGTCATACTGGCAAGAAAGGGGGCCACATGGCAAGATGGTTTTCAAGTTTAAGCTACGAAGAATCCCAAATCAACCGGAGCTTCCTTGGATTGAACTGAAGAATTCCAACACGTTCACATTAAGGAAGGGCTTGTGTGTTGCTGACATCTCACATGGTAAAGAGGCATTACCAATTTGTGCTGTGAATACCAAAGACCATCAAAAACCACCATCGTTTGAATATATCACTAGGATGATCTACCCTGGTTGGTTGAAGCCAATACCTTCTAAGGGATGTAACTGTACGGACAGATGCTCTGACCCTACAACATGTTCTTGTGCTATTAGAAATGGAGGAATCCCATTCAATCACACAGGATGTATTGTAGAAGTAAAGTCTCTAGTCTATGAGTGTGGTCCTTCTTGCAAATGCCCTCCAGATTGCTATAGCAGAGTCAGCCAACATGGCATCAAATTTCCACTTGAAATTTATAAAACTGAAAAAAGGGGATGGGGTGTGAGATCTCTATGCTCCATCCCTTCTGGAAGTTTTGTATGTGAATACATAGGAGAGTTGATTGAAGACAAAGAAGCTGAGATGAGAACTGGTCTTGATGAGTATCTGTTTGACATAGGTAAGAACTTGATCAATAATGGTATACTTTCTGATGGAGTCTCCAGGCCTGAAGTCTCTGAGGGTGGTGGTGGTTTCACCATTGATGCAGCTCGGTACGGTAATCTGGGCAGATTTTTCAACCATAGTTGTGTCCCTAATATGTATGCACAAGATGTTTTGTATGATCATGGCGACCGCAGGATTCCTCACATAATGCTGTTTGCCGCTGAGAACATTCCTCCATTAAAAGAGCTGACTTATGATTACAATTACTCAAAAGATCAAATCTTCAATTCTGACGGCAGCATAAAGAAGAAGGATTGCTTTTGTGGCTCTGTGGGATGCACTGGAAGGATGTATTGA 2064 0.4162 MPTSVLDGQSGEKLLPKAFAIRDYPPGVGPNAARIHVKPKEDSTKGGEANLQHSATRRFVSAIRDYPPYCGRNSRGLSKADVSKLMQRHLTGVREERKRRLDYLKRGDGSKAVMMTKDSLNHSNMKVFKKKEGNAASGATGRLAVLGKNGRDTNYSRKFSDGHRSYGVNIPLLRHRNLSIHNNDSVVARITLRDTLRSFQTLCRKLLQEVEAQSKGQAKIWKRIDLEAANILKREGKYINEGKIFGSVPGVEIGDEFDYRVELNLVGLHRNIQAGIDYATHNGEHLATSIVASGGYNDELDNSGVLIYSGHGGNVMSKKKEPEDQKLERGNLALKNSSKKKNPVRVIRGAFFGGGSRRTFVYDGLYEVESYWQERGPHGKMVFKFKLRRIPNQPELPWIELKNSNTFTLRKGLCVADISHGKEALPICAVNTKDHQKPPSFEYITRMIYPGWLKPIPSKGCNCTDRCSDPTTCSCAIRNGGIPFNHTGCIVEVKSLVYECGPSCKCPPDCYSRVSQHGIKFPLEIYKTEKRGWGVRSLCSIPSGSFVCEYIGELIEDKEAEMRTGLDEYLFDIGKNLINNGILSDGVSRPEVSEGGGGFTIDAARYGNLGRFFNHSCVPNMYAQDVLYDHGDRRIPHIMLFAAENIPPLKELTYDYNYSKDQIFNSDGSIKKKDCFCGSVGCTGRMY 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01424 687 ProSiteProfiles Pre-SET domain profile. 459 518 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr13g01424 687 Pfam SET domain 532 657 IPR001214 GO:0005515
Accr13g01424 687 SUPERFAMILY SET domain 404 664 IPR046341 -
Accr13g01424 687 SMART set_7 521 663 IPR001214 GO:0005515
Accr13g01424 687 SMART preset_2 415 505 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr13g01424 687 ProSiteProfiles Post-SET domain profile. 671 687 IPR003616 -
Accr13g01424 687 ProSiteProfiles YDG domain profile. 246 389 IPR003105 -
Accr13g01424 687 ProSiteProfiles SET domain profile. 521 657 IPR001214 GO:0005515
Accr13g01424 687 SUPERFAMILY PUA domain-like 228 402 IPR015947 -
Accr13g01424 687 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 111 687 IPR025794 GO:0016571
Accr13g01424 687 Gene3D SET domain 410 687 IPR046341 -
Accr13g01424 687 Gene3D - 227 409 IPR036987 -
Accr13g01424 687 SMART G9a_1 241 393 IPR003105 -
Accr13g01424 687 Pfam SAD/SRA domain 245 393 IPR003105 -
Accr13g01424 687 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 57 679 - -
Accr13g01424 687 SMART PostSET_3 671 687 IPR003616 -
Accr13g01424 687 Pfam Pre-SET motif 418 513 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01424 Accr-Chr13 21778699 21780762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01424 243 687 EF-hand Containing Proteins AT5G13960 40.125 4.87e-109 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr13g01424 SAD_SRA 1.7e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01424 K11420 - qsa:O6P43_024410 712.605