Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01421 ATGGGTGAGAATGGCTTGGATGGCCATGTGACTGAGCATGATAAGGCAACTACATTTGAGAATCACGCAGAGACCAGCATAAACGAGGAAAACAGAGAGATGGCAAAGCAAAAAGGAAAAGCCGACACAGTTCCATTTCACAAGTTGTTCTTATTTGCGGATTACACCGATATTCTGTTAATGATCGCTGGCACCATTGGGGGCATCGGAAACGGTATGACTTTGCCTCTCATCACGTTACTGATGGGCAAAATGATCAATGCTTTTGGTAATAACCAGCACAGCAGCGACGTCACTTCAATAGTTTCCAAGGTTTCTTTGAATTTTGTGTACTTGGCAGTAGGAAGTGGCGTGGCAGCGTTCCTTCAGGTGTCTTGCTGGATGATCACAGGGGAAAGACAGGCTACGCGGATAAGGGGATTGTATCTGAAAACCATACTAAGACAAGACGTTACTTTCTTCGATAAGGAAACAAACACCGGAGAGGTGGTCGGGAGAATGTCCGGTGATACTGTTCTCATACAGGATGCCATGGGAGAGAAGGTTGGGAAATTTCTGCAACTAGTTTCAACATTCATCGGCGGCTTCGTGGTAGCATTTATCAAAGGATGGCTTCTTTCACTCGTCATGTTGTCCATTATTCCACTGCTTGTGGTATCTGGGGGATGCATGGCCTTCTTTATAGGAAGGATGGCTTCCCGTGGTCAAACGGCTTATGGGAAAGCAGCAAATGTCGTTGAGCAAACTCTTGGCTCTATTAGAACTGTTGCATCCTTCACAGGTGAAAAGGAAGCAGTGTCTAGATACAACAAATTTCTTGGGGATGCTTACAAATCAGGAGTCCGTGAAGGTTTTGTAGGCGGCCTTGGTTTCGGCATGGTTATGTGTGTGTTTTTCTGTGGTTATGCTTTCGCTGTATGGTTTGGCGCAAAGATGATATTGGAAAGAGGATACAACGGCGGAACGGTGATTAATGTAATTGTCGCTATATTAACCGCTTCCATGTCTCTTGGTCAGGCCACCCCTTGCTTGAGTGCTTTTGCTGCCGGTCAAGCTGCGGCTTATAAAATGTTCGAGACAATAGAGAGAAAGCCAGAGATAGACTCTTACAATCCAAATGGTAAAATATTAAAGGACATTAACGGCGACATAGAGTTGAAGGATGTTTACTTTAGTTATCCAACTAGACCCCAGGAGCTAATATTCAACGGGTTCTCTCTTCATATACCAAGTGGCACCACTGCTGCCTTGGTTGGAGAGAGTGGAAGTGGGAAGTCAACAGTCATTAGCTTAATCGAAAGATTCTACGATCCACTGGCAGGTGAAGTTCTTATTGATGGCATCAACTTGAGAGAACTTCAGCTTAGATGGATTAGGGGTAAAATCAGCCTCGTCAGCCAGGAGCCCGTGTTGTTTGGATCTAGCATTAAGGATAACATCTTATACGGAAAGGAGGGAGCAACAATTGAAGAAATAAGGGCCGCAGCTGAACTTGCAAATGCTGCTAAGTTCATCGACAAATTGCCACAGGGATATGATACAATGGTCGGTGAGCATGGAACTCAACTGTCTGGTGGACAGAAACAGCGTATTGCTATTGCAAGAGCAATTATAAAAGATCCAAGAATACTACTTCTAGATGAAGCGACGAGTGCTCTAGATGCAGAGTCTGAAAGGATAGTTCAAGAGGCTTTGGATAGGGTAATGGCCAATCGAAGTACTGTTATTGTGGCTCATCGGTTGAGCACAGTAAGGAATGCTGATATGATTGCTGTGATTCATAGGGGAAAGATGGTTGAAAAAGGAACGCATTCAGAGTTGCTCGAGGATCCCGAGGGAGCTTACTCTCAGCTTATACGCTTGCAAGAAGTAAACAAAGAGTCAGAGGAACCTTCAGAGCGTCAAAATAAAAGTGAAATTTCCGTAGAATCGTTCAGGCAATCGAGCCAAAGGAGGTCGCTTCGGAGATCCACAAGTCGTGGATCATCTGTCGGCAACAGTGGCAACAGTAGCAACCACTCATTTTCAATACCGTTTGGCTTGCCCACTGTAGTTAACGTCCCTGAACCCGAACTTAAAAAATTGGACGCAAAAAAACAATTGCCACCGGTTCCACTTCATCGCCTTGCTTCCCTTAACAAGCCTGAAATTCCAGTGCTTCTGCTCGGATGTGTGTCTGCCGTTATAAATGGTGCAATACTTCCAGTGTTTGGTTTGTTGATTTCCTCTGTTATCAAAACATTCTTCGAGTCACCTCATCAGATGAAAAAGGACTCCAAGTTTTGGGCTCTTATCTTTTTGGACCTCGGCATTGCTTCTCTGCTTGCACTCCCATCCCGAGGATACTTGTTTTCTGTAGCTGGATGTAAGTTAATCCAACGCATTAGACTGATGTGTTTTGAGAAGGTTGTAAACATGGAGGTTAGTTGGTTTGATGACCCAGAGCACTCAAGTGGGACAATAGGTGCAAGGCTTTCGGCAGATGCTTCGACAGTGCGAGCCCTTGTTGGTGATGCGCTGGGTCTTCTGATTCAAAATATAGCATCGTCGTTGACTGGTTTAGTTATTGCTTTCTTTGCGAGCTGGGAGTTAGCTTTAATTATTCTAGTCATTATTCCCCTGATTGGGGTGAGTGGACATGTTCAAATGAAATTCATGAAGGGTTTTAGCGCTGATGCAAAGATGATGTACGAAGAAGCAAGCCAAGTAGCTAATGATGCTGTTGGAAGCATCAGAACAGTAGCTTCTTTCTGTGCCGAAGATAAGGTAATGGAACTGTATAGGAAGAAATGCGAAGGCCCCATGAAATCTGGGATGCGGCTAGGCTTGATCAGTGGAATCGGATTTGGGTGTTCGTTTTTCTTACTTTTTAGTGTCTATGCAACAAGTTTCTATGCCGGAGCTAGACTTGTGGATGCTGGCAGAATTACGTTCTCAGCCGTTTTTCGGGTTTTCTTTGCTCTGACAATGACGACAATGGCAGTTTCCCAGTCGAGCTCTATGGCTCCAGATTCTAGCAAAGCCAAGTCAGCCACTTCTTCCATATTTGAACTAATTGACAGGAAGTCCCAGATAGACCCCAGCGATGAGTCTGGTGCCATGTTGGACAACGTTAAGGGAGAAATTGAGCTTCGTCATGTGAGCTTCAAATATCCATCCAGACCAGATATACAAATTTTCCGAGACCTCAGTTTGGCCATTCATTCGGGCAAGACAGTGGCCCTTGTTGGAGAGAGTGGAAGCGGGAAATCAACAGTGATTGCACTGCTGCAAAGATTTTATGACCCAAACTCAGGTGAGATCACGCTTGATGGAAGAGAACTTCGAACGTTGCAGATAAAGTGGCTGAGACAGCAGATGGGGCTGGTGAGTCAAGAACCCGTGTTATTCAATGACACCATTCGTGCCAATATTGCTTATGGAAAAGGAGGCGATGCCACTGAAGCGGAAATCATAGCCGCAGCAGAACAAGCCAACGCTCATAAGTTCATAAGCGGCTTACACCAGGGTTATGACGCGGTGGTGGGGGAGAGGGGGCTGCAGTTATCAGGAGGGCAGAAACAGAGAGTGGCCATAGCACGTGCCATAATAAAGAGTCCAAAGATATTACTGCTGGATGAGGCCACGAGTGCGTTAGATGCAGAGTCAGAGAGAGTAGTGCAAGAAGCATTAGACAAAGTGATGGTGAATAGGACGACGGTGGTTGTGGCGCACCGTCTATCCACTATCAAGAATGCGGATGTGATTGCGGTGGTCAAGAACGGAGTCATTGTGGAGAAAGGAAGGCATGAGTCGTTGATTAACATTAAAGATGGCTTCTACATGTCCCTTGTCCAGCTTCATACAAGTGCTTCTGCAATATGA 3864 0.4537 MGENGLDGHVTEHDKATTFENHAETSINEENREMAKQKGKADTVPFHKLFLFADYTDILLMIAGTIGGIGNGMTLPLITLLMGKMINAFGNNQHSSDVTSIVSKVSLNFVYLAVGSGVAAFLQVSCWMITGERQATRIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLVSTFIGGFVVAFIKGWLLSLVMLSIIPLLVVSGGCMAFFIGRMASRGQTAYGKAANVVEQTLGSIRTVASFTGEKEAVSRYNKFLGDAYKSGVREGFVGGLGFGMVMCVFFCGYAFAVWFGAKMILERGYNGGTVINVIVAILTASMSLGQATPCLSAFAAGQAAAYKMFETIERKPEIDSYNPNGKILKDINGDIELKDVYFSYPTRPQELIFNGFSLHIPSGTTAALVGESGSGKSTVISLIERFYDPLAGEVLIDGINLRELQLRWIRGKISLVSQEPVLFGSSIKDNILYGKEGATIEEIRAAAELANAAKFIDKLPQGYDTMVGEHGTQLSGGQKQRIAIARAIIKDPRILLLDEATSALDAESERIVQEALDRVMANRSTVIVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLEDPEGAYSQLIRLQEVNKESEEPSERQNKSEISVESFRQSSQRRSLRRSTSRGSSVGNSGNSSNHSFSIPFGLPTVVNVPEPELKKLDAKKQLPPVPLHRLASLNKPEIPVLLLGCVSAVINGAILPVFGLLISSVIKTFFESPHQMKKDSKFWALIFLDLGIASLLALPSRGYLFSVAGCKLIQRIRLMCFEKVVNMEVSWFDDPEHSSGTIGARLSADASTVRALVGDALGLLIQNIASSLTGLVIAFFASWELALIILVIIPLIGVSGHVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKSGMRLGLISGIGFGCSFFLLFSVYATSFYAGARLVDAGRITFSAVFRVFFALTMTTMAVSQSSSMAPDSSKAKSATSSIFELIDRKSQIDPSDESGAMLDNVKGEIELRHVSFKYPSRPDIQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPNSGEITLDGRELRTLQIKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAEQANAHKFISGLHQGYDAVVGERGLQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQEALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHESLINIKDGFYMSLVQLHTSASAI 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01421 1287 CDD ABC_6TM_Pgp_ABCB1_D1_like 61 345 - -
Accr13g01421 1287 SUPERFAMILY ABC transporter transmembrane region 703 1026 IPR036640 GO:0005524|GO:0016020
Accr13g01421 1287 CDD ABC_6TM_Pgp_ABCB1_D2_like 710 1025 - -
Accr13g01421 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 622 IPR027417 -
Accr13g01421 1287 CDD ABC_MTABC3_MDL1_MDL2 1042 1280 - -
Accr13g01421 1287 Gene3D - 382 639 IPR027417 -
Accr13g01421 1287 FunFam ABC transporter B family member 9 48 379 - -
Accr13g01421 1287 SMART AAA_5 411 583 IPR003593 GO:0016887
Accr13g01421 1287 SMART AAA_5 1069 1262 IPR003593 GO:0016887
Accr13g01421 1287 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 62 349 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr13g01421 1287 Pfam ABC transporter transmembrane region 720 993 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr13g01421 1287 Pfam ABC transporter transmembrane region 61 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr13g01421 1287 ProSitePatterns ABC transporters family signature. 523 537 IPR017871 GO:0005524|GO:0016887
Accr13g01421 1287 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1042 1279 IPR003439 GO:0005524
Accr13g01421 1287 ProSitePatterns ABC transporters family signature. 1182 1196 IPR017871 GO:0005524|GO:0016887
Accr13g01421 1287 MobiDBLite consensus disorder prediction 624 640 - -
Accr13g01421 1287 Pfam ABC transporter 1061 1210 IPR003439 GO:0005524
Accr13g01421 1287 SUPERFAMILY ABC transporter transmembrane region 56 368 IPR036640 GO:0005524|GO:0016020
Accr13g01421 1287 Gene3D - 1032 1286 IPR027417 -
Accr13g01421 1287 Gene3D ABC transporter type 1, transmembrane domain 108 1016 IPR036640 GO:0005524|GO:0016020
Accr13g01421 1287 FunFam ABC transporter B family member 1 374 623 - -
Accr13g01421 1287 MobiDBLite consensus disorder prediction 641 671 - -
Accr13g01421 1287 FunFam ABC transporter B family member 1 700 1008 - -
Accr13g01421 1287 PANTHER ABC TRANSPORTER B FAMILY 28 624 IPR039421 -
Accr13g01421 1287 FunFam ABC transporter B family member 1 1032 1282 - -
Accr13g01421 1287 MobiDBLite consensus disorder prediction 624 671 - -
Accr13g01421 1287 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 620 IPR003439 GO:0005524
Accr13g01421 1287 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 721 1007 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr13g01421 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1032 1280 IPR027417 -
Accr13g01421 1287 Pfam ABC transporter 403 551 IPR003439 GO:0005524
Accr13g01421 1287 CDD ABC_MTABC3_MDL1_MDL2 384 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01421 Accr-Chr13 21740837 21745862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01421 37 1281 Calmodulin-binding Proteins AT2G36910 44.400 0.0 1045