Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01419 ATGGCTACATCTTCATCAGTTCTTGATGGTCATTCTGAAGAAAGAATGCTAAGGAAGCTATCTGCATATCGTAATTACCCGCCTGGCGTTGGACGGACTAGCAGATTTTTTCCTGTAAGAAGAGTCTCAGCCGTTAGAGACTATCCTCCATTTTGTGGGCCCAATGCTCTGAGTCTCAGTAAGGGAGATGTTTCCAAGGGCAATGGTACAGAAGAAAGGAAGAGAGAATTTGATTTCCTTGCACGGGGCGGTGGCTCTAAAACTGTGATGACGGCTAGAAAATCTGTGAATCATTCCTGGATGATGCTTGTGAAAAAGAAAGAAGGCAATGCTTCTTCCTCTGGAGGTATGGATGGAAAATTTTCTGATGCCCACAGATATTGTTATAATGTAAATGTTCCACTTCTATGTCGTGATAATTTGAGCAGAGGCAACAGTGAAGCAGACGTCACTCGAAATACTGTAAGGGAGATAATGCGCTGCTTCCAAGCTGTTTGTAGAAAATTGTTGCAGGAAGAAGAAGCGAAGTTAAAAGGCAAAGCAAAAATTCGTAGGAGGATTGATTTAGAGGCAGCAAAGATACTTAAAAAGGAAGGCAAATATATTAATTCAGGCAAGTACATCTTTGGTTCTGTTCCTGGGGTTGAAATAGGCGATGAGTTTGACTATAGAATGGAGCTTCATTTAGTCGGTCTTCATCGCAATTTACAGGCTGGCATAGATTATACAATGCGCAATGGTGAGCATCTTGCAACTAGTATTGTTGCATCAGGGGGATACAATGATGAGTTGGATAAATCAGGTCTTTTGATTTATTCAGGGCACGGCGGGAATGTGATGTCCAGAAAGAAAGCACCTGAAGACCAGAAGCTCGAGCGGGGTAATCTTGCTTTGAAGAACAGTATCAAGAAAAAGAATCCTGTTAGAGTGATACGTGGTGCTTTCTTTGGAGGTGGAAGTCGTAGAACATTTGTGTATGATGGACTGTATGAAGTTGAGTCATGCTGGCAAGAAAGGGGGCCACATGGCAAGATGATTTTTAAGTTTCAGCTACGAAGAATCCCAAATCAACCAGAGCTTCCCTGGATTGAACTGCAAAATTCCAACATGTTCACGTTAAGGAAGGGTTTGTGTGTTGCTGACATCTCAAATGGTAAAGAGGCATTGCCAATCCTTGCTGTCAATACCATAGATAATGAAAAACCTCCAATCTTTGAATATATCACTAGGATGATCTACCCTAGTTGGTTGCAGCCGACACCTTCTAAGGGATGTAACTGTACGGACAGATGCTCTGACCCTACAACATGTTCCTGTGCTGGGGAAAATGGAGGAATCCCATTCAATCACACAGGATGTATAGTAGAAGTAAAGCCCCTAGTCTATGAGTGTGGCCCTTCTTGCAAATGCCCTCCTGATTGCTATAACAGAGTTAGCCAAAATGGCATAAAATTCCCACTCGAAATTTATAAAACTGACAAAAGGGGATGGGGTGTGAGATCTCTGCGCTCCATCCCTTCTGGAAGATTTGTATGTGAATACATAGGAGAGTTGCTTGAAGACAAGGAAGCTGAGGAAAGAAGTGGTCATGATGAGTATCTTTTCGATATTGGTGGTAATTTGATAAAAGATGCTTTAGATTCTGGTGGTGGCTTCACCATCGATGCAGCCCGCTTCGGTAATCTGGGCAGATTTTTCAACCATAGCTGTGCCCCTAATATGTATGCACAAAATGTTCTGTATGATCATGGCGACCACAGGATTCCTCACATAATGCTCTTTGCTGCTGAGAACATTCCTCCATTAAAAGAGCTGACTTATGATTACAATTACTCAAAAGATGAAATCTTCGATTCGGATGCCAACATAAAGAAGAAAAATTGCTATTGCGGCTCTGTGGGGTGTACTGGAAGGATTTATTGA 1923 0.4217 MATSSSVLDGHSEERMLRKLSAYRNYPPGVGRTSRFFPVRRVSAVRDYPPFCGPNALSLSKGDVSKGNGTEERKREFDFLARGGGSKTVMTARKSVNHSWMMLVKKKEGNASSSGGMDGKFSDAHRYCYNVNVPLLCRDNLSRGNSEADVTRNTVREIMRCFQAVCRKLLQEEEAKLKGKAKIRRRIDLEAAKILKKEGKYINSGKYIFGSVPGVEIGDEFDYRMELHLVGLHRNLQAGIDYTMRNGEHLATSIVASGGYNDELDKSGLLIYSGHGGNVMSRKKAPEDQKLERGNLALKNSIKKKNPVRVIRGAFFGGGSRRTFVYDGLYEVESCWQERGPHGKMIFKFQLRRIPNQPELPWIELQNSNMFTLRKGLCVADISNGKEALPILAVNTIDNEKPPIFEYITRMIYPSWLQPTPSKGCNCTDRCSDPTTCSCAGENGGIPFNHTGCIVEVKPLVYECGPSCKCPPDCYNRVSQNGIKFPLEIYKTDKRGWGVRSLRSIPSGRFVCEYIGELLEDKEAEERSGHDEYLFDIGGNLIKDALDSGGGFTIDAARFGNLGRFFNHSCAPNMYAQNVLYDHGDHRIPHIMLFAAENIPPLKELTYDYNYSKDEIFDSDANIKKKNCYCGSVGCTGRIY 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01419 640 SMART set_7 485 616 IPR001214 GO:0005515
Accr13g01419 640 Pfam SET domain 496 610 IPR001214 GO:0005515
Accr13g01419 640 SMART G9a_1 205 357 IPR003105 -
Accr13g01419 640 SUPERFAMILY PUA domain-like 191 365 IPR015947 -
Accr13g01419 640 Pfam SAD/SRA domain 209 357 IPR003105 -
Accr13g01419 640 ProSiteProfiles SET domain profile. 485 610 IPR001214 GO:0005515
Accr13g01419 640 Gene3D - 191 372 IPR036987 -
Accr13g01419 640 Gene3D SET domain 373 640 IPR046341 -
Accr13g01419 640 ProSiteProfiles Pre-SET domain profile. 423 482 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr13g01419 640 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 62 640 IPR025794 GO:0016571
Accr13g01419 640 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 117 632 - -
Accr13g01419 640 SMART preset_2 379 469 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr13g01419 640 Pfam Pre-SET motif 382 477 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Accr13g01419 640 ProSiteProfiles Post-SET domain profile. 624 640 IPR003616 -
Accr13g01419 640 SUPERFAMILY SET domain 369 617 IPR046341 -
Accr13g01419 640 ProSiteProfiles YDG domain profile. 210 353 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01419 Accr-Chr13 21694181 21696103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01419 152 637 Su(var)3-9 homologs AT5G04940 38.104 7.94e-106 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr13g01419 SAD_SRA 2.2e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01419 K11420 - qsa:O6P43_024410 704.516