Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01410 ATGGAGGTTAGTTGGTTTGATGACCCAGAGCATTCAAGTGGAACAATAGGTGCAAGGCTTTCGGCAGATGCTTCGACAGTACGAGCCCTTGTTGGTGATGCGCTGGGTCTTCTGATTCAAAATATAGCATCATCGTTGACTGGTTTAGTTATTGCTTTCGTTGCGAGCTGGGAGTTAGCTTTAATTATTCTAGTCATTATTCCCCTGATTGGGGTGAATGGATATGTTCAAATGAAATTCATGAAGGGTTTTAGCGCTGATGCAAAGATGATGTACGAAGAAGCAAGCCAAGTAGCTAATGATGCTGTTGGAAGCATCAGAACAGTAGCTTCTTTCTATGCCGAAGATAAGGTAATGGAACTGTATAGGAAGAAATGCGAAGGCCCCATGAAATATGGGATGCGGCTAGGCTTGATTAGTGGAATCAAATTTGGGTGTTCGTTTTTCTTACTTTTTAGTGTCAATGCAACAAGTTTCTATTCTGGAGCTAGACTTGTGGATGCTGGTAGAACTACGTTCTCAGCCGTTTTTCGGGTTTTCTTTGCTTTGACAATGACGGCAATGGCAGTTTCCCAGTCAAGCTCCATGGCTCCAGATTCTAGCAAAGCCAAGTCAGCCACATCTTCCATATTTGAACTACTCCCTCTGGTCCTTATTATAAGGAAGTCCCAGATAGACCCCAGCGACGAGTCTGGTGCCACGTTGGACAACGTTAAGGGAGAAATTGAGCTTCGTCATGTGAGCTTCAAATATCTATCCAGACCAGATATACACAAATTTTCCGAGACCTCAGTTTGGCCATTCATTCGGGCAAGACAGTGGCCCTTGTTGGAGAGAGTGGAAGCGGGAAATCAACAGTGA 861 0.4425 MEVSWFDDPEHSSGTIGARLSADASTVRALVGDALGLLIQNIASSLTGLVIAFVASWELALIILVIIPLIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFYAEDKVMELYRKKCEGPMKYGMRLGLISGIKFGCSFFLLFSVNATSFYSGARLVDAGRTTFSAVFRVFFALTMTAMAVSQSSSMAPDSSKAKSATSSIFELLPLVLIIRKSQIDPSDESGATLDNVKGEIELRHVSFKYLSRPDIHKFSETSVWPFIRARQWPLLERVEAGNQQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01410 286 Gene3D ABC transporter type 1, transmembrane domain 204 231 IPR036640 GO:0005524|GO:0016020
Accr13g01410 286 Gene3D ABC transporter type 1, transmembrane domain 2 203 IPR036640 GO:0005524|GO:0016020
Accr13g01410 286 SUPERFAMILY ABC transporter transmembrane region 2 214 IPR036640 GO:0005524|GO:0016020
Accr13g01410 286 CDD ABC_6TM_Pgp_ABCB1_D2_like 1 220 - -
Accr13g01410 286 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 261 IPR039421 -
Accr13g01410 286 Pfam ABC transporter transmembrane region 1 188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr13g01410 286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 202 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr13g01410 286 Gene3D - 232 258 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01410 Accr-Chr13 21544138 21546923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01410 2 272 Calmodulin-binding Proteins AT2G36910 36.397 1.75e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01410 K05658 - gmx:100800034 395.201