Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01408 ATGTCTTCTGATGTCTCAAATGGGGCTTCGTCTTCTCCATACAGAGGTGTTCGCAAGAGAAAATGGGGCAAATGGGTGTCTGAAATCAGAGAGCCCGGCAAAAAGACCAGAATTTGGTTGGGCAGCTTCAAGACGTCGGAGATGGCCGCCACGGCCTACGATGTCGCCGCGTTGCACTTCCGTGGTCGGGACGCCAGGCTCAACTTCCCTCAGCTCGCCGGCAGTCTTCCCCGTCCGGCCAGTAATGACGCCGACGACATTCGCATGGCGGCACATGAGGCCGCCTTGACTCTGATCACGGCGGGGTCTGCCACATCTCTTGAGCAGTCTTCAGGTTCCGAGGCATCGCCGGTGATGGTCGGACTCTCACCGACGCAGATTCAGGCGATCAATGAGATGCCGTTGGACTCGCCGAGGATGTGGATGCAAATGGCGGACTCAATGATGTTAGATGAAACGACGCCGTCTACGTATGAGAACGACGAGAATATGCAGAGTGATTCTCTGTGGGATCCATAG 519 0.5607 MSSDVSNGASSSPYRGVRKRKWGKWVSEIREPGKKTRIWLGSFKTSEMAATAYDVAALHFRGRDARLNFPQLAGSLPRPASNDADDIRMAAHEAALTLITAGSATSLEQSSGSEASPVMVGLSPTQIQAINEMPLDSPRMWMQMADSMMLDETTPSTYENDENMQSDSLWDP 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01408 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 144 - -
Accr13g01408 172 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Accr13g01408 172 PRINTS Ethylene responsive element binding protein signature 52 72 IPR001471 GO:0003700|GO:0006355
Accr13g01408 172 MobiDBLite consensus disorder prediction 1 20 - -
Accr13g01408 172 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Accr13g01408 172 Pfam AP2 domain 14 62 IPR001471 GO:0003700|GO:0006355
Accr13g01408 172 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Accr13g01408 172 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Accr13g01408 172 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Accr13g01408 172 CDD AP2 14 70 IPR001471 GO:0003700|GO:0006355
Accr13g01408 172 MobiDBLite consensus disorder prediction 151 172 - -
Accr13g01408 172 FunFam Ethylene-responsive transcription factor 2 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01408 Accr-Chr13 21480779 21481297 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01408 12 172 AP2-EREBP Transcription Factor Family AT1G71450 61.538 6.23e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr13g01408 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01408 - - hsyr:120217104 229.18