Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01404 ATGAGTTGCAGCTCAGGCGACAATAATGGAAGCAACAGCATCAGAAACAAGGACAACGGCGCAGTCAGGTATAAGGGTGTCCGGCGAAGGAAATGGGGCAAGTGGGTGTCGGAGATTCGAGTCCCGGGGTCACAAGAGCGGCTTTGGTTGGGCACTTATGCATCGCCAGAGGCGGCCGCGGTGGCTCACGACGTGGCTTACTACTGCTTGAGGAAACCGGCGACATTGGAGAAGCTAAACCTGCCGGAGATGTTGCCTTCTCGTTATGTCTGGCAGCAGCGGGAAATGTCACCGAGGTCAGTGCAGGAGGCTGCTTCAAACGCCGGCCTGGCGCTTGATGCGCAGAGGATTGTAGAAGCACAAGAGAAGAATGAGAAAACCGATGAGCATCACAGAGAAAACAGAGACATGAATGATGGGTTTTGTTGGGACTGGAATGATGACGGCAGCGGTGGAAGCAGCGGTGATGACGGCTATTTATGGCAAGGAATCGCCGGACAAGGAGGAGAAACATCGAGCATTTCCGTTGATGATTATTTTGTAGATAATCAACATTATTAG 561 0.5223 MSCSSGDNNGSNSIRNKDNGAVRYKGVRRRKWGKWVSEIRVPGSQERLWLGTYASPEAAAVAHDVAYYCLRKPATLEKLNLPEMLPSRYVWQQREMSPRSVQEAASNAGLALDAQRIVEAQEKNEKTDEHHRENRDMNDGFCWDWNDDGSGGSSGDDGYLWQGIAGQGGETSSISVDDYFVDNQHY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01404 186 ProSiteProfiles AP2/ERF domain profile. 23 82 IPR001471 GO:0003700|GO:0006355
Accr13g01404 186 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Accr13g01404 186 Gene3D AP2/ERF domain 22 83 IPR036955 GO:0003700|GO:0006355
Accr13g01404 186 SUPERFAMILY DNA-binding domain 23 76 IPR016177 GO:0003677
Accr13g01404 186 SMART rav1_2 23 88 IPR001471 GO:0003700|GO:0006355
Accr13g01404 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 130 - -
Accr13g01404 186 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Accr13g01404 186 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Accr13g01404 186 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01404 Accr-Chr13 21394474 21395034 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01404 23 124 AP2-EREBP Transcription Factor Family AT1G22810 58.824 2.26e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr13g01404 AP2 8.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01404 - - pcin:129297410 214.157