LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr13g01400	ATGGGGTGCCTCTGCTCAAGAGACAAGAATGAAGTTGATGAAAATGATAAAGAAGAAGACTTAGCCAAGTCTTCATCAGTACAACTGGTCCCTCCTGCTCTGTCAACAGCCCAGTTGGGTGGTGGTGCGGACACTGATGGCTCGGTGAATAGGCTGCTTAAGAAATATTCACATACAAATGTAAACAACCATAGTGTAGTTGATACAAAACCAATAAAAGGTCAATATCAGAGACCTTCATCGTTTGATGCTAGTGTTGGGGAAGGGAAGGGATGGATGTCTCGAATACTTAGCATGTCAAAGGGTTCAGAAGCAGAACATGTTGCTGCAGGATGGCCATTGTGGTTATCTTCAGTAGCAGGAGATGCCATCAAGGGTTTGGTTCCTCGACGGCTAGACTCTTTCGAGAAGTTAGGCCAAGTGGGGCAAGGTGCTTATAGCAGTGTACACAAGGCTCTTGATTTACTTACTGGTAAAATTGTAGCAATGAAGAAAGTGCGTTTTTCACCTTCAGATGCTGAAAGTGTTCGGTTTATGGCTAGGGAAATCTATATTTTGCGCCAACTTGACCATCCAAATGTCATGAAGCTTGAGGGTATTGTGACATCAAGGACATCCAGCAGCTTGTATCTTGTCTTCGAGTACATGGAACATGACCTTGCTGGGCTAGAAGCGTTGCCTGGGATGAAGTTCACTGAATCTCAGATAAAATGTTACATGAGGCAATTGTTTTGTGGGCTTGAACACTGCCATAGTCGTGGTATACTACACCGTGACATCAAGGGTTCAAATCTGCTGCTTAACAGTGAGGGAATTCTTCAGATTGGGGACTTTGGTCTTTCAACTATTTACCAAACTGCTAATGGCAACAAGGAGCCATTGACTAGCCGTGTCGTGACTCTGTGGTATAGGCCGCCTGAGCTTTTACTTGGTGCTACAGATTATGGACCCGCAGTTGACTTATGGAGTGCTGGTTGCATTCTAGCAGAATTGCTTGTTGGGAAGCCTACTATGCCAGGAAGAACAGAAGTTGAACAAATGCATAAGATTTTTAAGCTCTGTGGTTCCCCAAGTGAAGAGTTTTGGCAGAAAACAAAATTGCCTCATGCAACAAGTTTTAAACCTCAGAGAAAATACAGACGCCGTGTTTCTGAAACATTTAAAGACTTTTCTCCTTCAGCCCTGGCTCTTGTCGAAAAGCTCCTTGCAATAGAACCAGAAGATCGAGGCTCAGCAACTTCTGCTCTTCAGAGTGAGTTCTTCACAACACCGCCCCTACCTTGTGATCCATCAAGTTTACCGAAGTTTCCTCCTAGCAAGGAGTATGATGCCAAGCTTAGAGATGAGGAAGCAAGAAGGAAAAACACTGAATCTGTAAAAAGACTTGAACCAGTATCTGTTGCAAGAGGTGCAAGAGATACAAATGCTCTCCGATCGCCAGAGTATAACGCTAAAGGAAATATATCTGTACAGGTTAGTTCAAATGCAAAAACGTCTAGTGGCAAATATACCTCCAGTGAGGATGGTAGTTCCCACTTTAGGATTTTGCCAGGCAGAGGTTCTGTACAAAACAGTCATGATCATCCTACATGGGGGAAGCAAATCGCTGCAACGGGATCACCATTGAATAAGAGATCAGACTCCAGGGAGAAGAATAAAGAGTTAAGGACACAGAGATCTAATGTAAACCAGGCAGTCGCAGATTTTTCTAACTCTTATATAAACAAGGGTTACGTGCCCAAGAAAAATAGGATGCACCACTCTGGACCATTGGTACCTCCGGGAGCTAACATCGATGACATGCTCCGAGAGCACGAGAAATTAATGCAGGAGGCATTCCGTACTGTCAAGGACAAGAACAACCATAAAAAAAACCTGTAA	1881	0.4381	MGCLCSRDKNEVDENDKEEDLAKSSSVQLVPPALSTAQLGGGADTDGSVNRLLKKYSHTNVNNHSVVDTKPIKGQYQRPSSFDASVGEGKGWMSRILSMSKGSEAEHVAAGWPLWLSSVAGDAIKGLVPRRLDSFEKLGQVGQGAYSSVHKALDLLTGKIVAMKKVRFSPSDAESVRFMAREIYILRQLDHPNVMKLEGIVTSRTSSSLYLVFEYMEHDLAGLEALPGMKFTESQIKCYMRQLFCGLEHCHSRGILHRDIKGSNLLLNSEGILQIGDFGLSTIYQTANGNKEPLTSRVVTLWYRPPELLLGATDYGPAVDLWSAGCILAELLVGKPTMPGRTEVEQMHKIFKLCGSPSEEFWQKTKLPHATSFKPQRKYRRRVSETFKDFSPSALALVEKLLAIEPEDRGSATSALQSEFFTTPPLPCDPSSLPKFPPSKEYDAKLRDEEARRKNTESVKRLEPVSVARGARDTNALRSPEYNAKGNISVQVSSNAKTSSGKYTSSEDGSSHFRILPGRGSVQNSHDHPTWGKQIAATGSPLNKRSDSREKNKELRTQRSNVNQAVADFSNSYINKGYVPKKNRMHHSGPLVPPGANIDDMLREHEKLMQEAFRTVKDKNNHKKNL	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr13g01400	626	CDD	STKc_CDK9_like	135	421	-	-
	Accr13g01400	626	SUPERFAMILY	Protein kinase-like (PK-like)	129	429	IPR011009	-
	Accr13g01400	626	Gene3D	Transferase(Phosphotransferase) domain 1	223	461	-	-
	Accr13g01400	626	FunFam	probable serine/threonine-protein kinase At1g54610	218	461	-	-
	Accr13g01400	626	PANTHER	CELL DIVISION PROTEIN KINASE	133	427	-	-
	Accr13g01400	626	MobiDBLite	consensus disorder prediction	480	511	-	-
	Accr13g01400	626	MobiDBLite	consensus disorder prediction	1	26	-	-
	Accr13g01400	626	SMART	serkin_6	135	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g01400	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	255	267	IPR008271	GO:0004672\|GO:0006468
	Accr13g01400	626	Gene3D	Phosphorylase Kinase; domain 1	129	222	-	-
	Accr13g01400	626	ProSitePatterns	Protein kinases ATP-binding region signature.	141	164	IPR017441	GO:0005524
	Accr13g01400	626	Pfam	Protein kinase domain	135	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g01400	626	MobiDBLite	consensus disorder prediction	7	23	-	-
	Accr13g01400	626	MobiDBLite	consensus disorder prediction	523	543	-	-
	Accr13g01400	626	MobiDBLite	consensus disorder prediction	440	460	-	-
	Accr13g01400	626	ProSiteProfiles	Protein kinase domain profile.	135	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g01400	626	FunFam	probable serine/threonine-protein kinase At1g54610	122	217	-	-
	Accr13g01400	626	MobiDBLite	consensus disorder prediction	420	559	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr13g01400	Accr-Chr13	21314308	21318712	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr13g01400	130	461	Core Cell Cycle Gene Families	AT5G10270	50.716	7.71e-115	351

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Accr13g01400		Pkinase	2.1e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr13g01400	K08819		-	qsa:O6P43_030056	749.584