Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01375 ATGATGAGGCTACAGTCATATGCGGGGCTTAGTTTCATTGCAACTCTAGCTGTTATATATCATGCTTTCCACAGCAGAGGTCAATTTTATCCAGCGATGGTTTTTCTGTCAACTTCCAAGATCAGCTTGGTACTTCTTCTCAACATGGGTCTAGTCATTATGTGTCTTTTATGGCAATTAACAAAGAAGGTGTTCCTTGGCACACTCCGAGAGGCGGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATTCTCTTTGCCATCACCATTTTTAGGCAGGATTTCTCTGTTACATTCCTTGCTATGGTCACAGCACTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAAAGAGTTGAATATATTGAGACCACTCCTACCGTGCCCTTGTTGTCTCACATTCGAATTGTGTCTTTTATGGTTTTCCTCCTGCTTCTTGATGGACTCTTTCTATATAGTTCCATGAAACAATTGATACAAACTTGGCAGGCTTCAGTTTCCCTCTTTTTTGCTTTCGAGTACATGATTCTGGCAACAACAACAGTGTCAATTTTTGTAAAATACCTTTTCTATGTCAGTGACATGCTTATGGAAGGACAATGGGAAAAGAAACCAGTCTTCACATTCTACTTGGAACTCATTAGGGATTTGCTTCACTTGTCTATGTATATGTGTTTCTTCCTTGTAATTTTCGTAAATTATGGTGTGCCTTTGCACTTAATAAGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGACTACGTACGTTATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAAACCCAGAAGAGCTTAATGCAAGTGATCCTACATGTATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTGTATGCGGGCATTTTTTTCATGTGCATTGCCTCCGGTCATGGTTGGAGCGTCAAAATACTTGCCCTATCTGCAGAGCCTTGGTTGTACCGCCTGAAAATGGGGCAACTACTGCTGGAGGGCAGCATGGGTCACAGTCAGACCAACAGGGAACAGGAACAGGAACAGGAACAGGAACTGGAACAAGTACTGGAAGCTCAGCTCAAGCTGAAGCTGGCAGTGGGGTGGCTACTGATAAATTGAGTCGTCATCAAGCTAGACTTCGAGCTTTAGCTGCCGCTGCTTCAATGTATGAGAAGTCTTTCGTATACCCATCTGCACCTTCTTTAGCATGTGCCCCTGGATACACTGTTCATCCTGCTGTTCAAAGACCCGCCGCTGAATCTTCTAGTACAGAACAACATACTTCAAGCGAACAAGCACAACGACAGGTTGTCACCCCTTTTGGATCAATGAATGTATCCTTCCATCCAATGGGACCGTTTCTTTTTCCTCCTCCAACACATGTAGCTAATGGGAATTATGGAGAGGGATCTGGATCTGATCCAAATGCGCCAAACCCTCTGCTGGAAGCTCAAAGAATTCAACACCAGATTGAGGTTCTGGAACATCAGCTCCAGATTCTGAAGGCAAGTGTTGAGGAAAATGTAAGTGAGGGCAAGCCATCATCAAGTAGCAAAGGTAAGCAGGTAGCTGCTTCATCTGTGTCTGATAATGGCCGTAATGACGAAATTCAAGAAATTCAAGGCGACAGTGTATAA 1674 0.4325 MMRLQSYAGLSFIATLAVIYHAFHSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMVFLLLLDGLFLYSSMKQLIQTWQASVSLFFAFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGVPLHLIRELYETFRNFKVRVADYVRYRKITSNMNDRFPDANPEELNASDPTCIICREEMTTAKKLVCGHFFHVHCLRSWLERQNTCPICRALVVPPENGATTAGGQHGSQSDQQGTGTGTGTGTGTSTGSSAQAEAGSGVATDKLSRHQARLRALAAAASMYEKSFVYPSAPSLACAPGYTVHPAVQRPAAESSSTEQHTSSEQAQRQVVTPFGSMNVSFHPMGPFLFPPPTHVANGNYGEGSGSDPNAPNPLLEAQRIQHQIEVLEHQLQILKASVEENVSEGKPSSSSKGKQVAASSVSDNGRNDEIQEIQGDSV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01375 557 MobiDBLite consensus disorder prediction 427 446 - -
Accr13g01375 557 PANTHER RING ZINC FINGER PROTEIN 1 515 - -
Accr13g01375 557 SUPERFAMILY RING/U-box 272 336 - -
Accr13g01375 557 MobiDBLite consensus disorder prediction 342 377 - -
Accr13g01375 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Accr13g01375 557 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Accr13g01375 557 MobiDBLite consensus disorder prediction 428 446 - -
Accr13g01375 557 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Accr13g01375 557 Pfam Ring finger domain 291 330 IPR001841 -
Accr13g01375 557 MobiDBLite consensus disorder prediction 517 557 - -
Accr13g01375 557 MobiDBLite consensus disorder prediction 340 385 - -
Accr13g01375 557 Coils Coil 496 516 - -
Accr13g01375 557 SMART ring_2 292 329 IPR001841 -
Accr13g01375 557 MobiDBLite consensus disorder prediction 521 557 - -
Accr13g01375 557 MobiDBLite consensus disorder prediction 469 492 - -
Accr13g01375 557 CDD RING-H2_synoviolin 289 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01375 Accr-Chr13 20574904 20583492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01375 1 539 C3H Transcription Factor Family AT3G16090 62.731 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01375 K10601 - gmx:100816441 756.903