Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01374 ATGATGAGGCTACAGTCATATGCGGGGCTTAGTTTCATTGCAACTCTAGCTGTTATATATCATGCTTTCCACAGCAGAGGTCAATTTTATCCAGCGATGGTTTTTCTGTCAACTTCCAAGATCAGCTTGGTACTTCTTCTCAACATGGGTCTAGTCATTATGTGTCTTTTATGGCAATTAACAAAGAAGGTGTTCCTTGGCACACTCCGAGAGGCGGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATTCTCTTTGCCATCACCATTTTTAGGCAGGATTTCTCTGTTACATTCCTTGCTATGGTCACAGCACTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAAAGAGTTGAATATATTGAGACCACTCCTACCGTGCCCTTGTTGTCTCACATTCGAATTGTGTCTTTTATGGTTTTCCTCCTGCTTCTTGATGGACTCTTTCTATATAGTTCCATGAAACAATTGATACAAACTTGGCAGGCTTCAGTTTCCCTCTTTTTTGCTTTCGAGTACATGATTCTGGCAACAACAACAGTGTCAATTTTTGTAAAATACCTTTTCTATGTCAGTGACATGCTTATGGAAGGACAATGGGAAAAGAAACCAGTCTTCACATTCTACTTGGAACTCATTAGGGATTTGCTTCACTTGTCTATGTATATGTGTTTCTTCCTTGTAATTTTCGTAAATTATGGTGTGCCTTTGCACTTAATAAGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGACTACGTACGTTATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAAACCCAGAAGAGCTTAATGCAAGTGATCCTACATGTATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTGTATGCGGGCATTTTTTTCATGTGCATTGCCTCCGGTCATGGTTGGAGCGTCAAAATACTTGCCCTATCTGCAGAGCCTTGGTTGTACCGCCTGAAAATGGGGCAACTACTGCTGGAGGGCAGCATGGGTCACAGTCAGACCAACAGGGAACAGGAACAGGAACAGGAACTGGAACAAGTACTGGAAGCTCAGCTCAAGCTGAAGCTGGCAGTGGGGTGGCTACTGATAAATTGAGTCGTCATCAAGCTAGACTTCGAGCTTTAGCTGCCGCTGCTTCAATGTATGAGAAGTCTTTCGTATACCCATCTGCACCTTCTTTAGCATGTGCCCCTGGATACACTGTTCATCCTGCTGTTCAAAGACCCGCCGCTGAATCTTCTAGTACAGAACAACATACTTCAAGCGAACAAGCACAACGACAGGTTGTCACCCCTTTTGGATCAATGAATGTATCCTTCCATCCAATGGGACCGTTTCTTTTTCCTCCTCCAACACATGTAGCTAATGGGAATTATGGAGAGGGATCTGGATCTGATCCAAATGCGCCAAACCCTCTGCTGGAAGCTCAAAGAATTCAACACCAGATTGAGGTTCTGGAACATCAGCTCCAGATTCTGAAGGCAAGTGTTGAGGAAAATGTAAGTGAGGGCAAGCCATCATCAAGTAGCAAAGGTAAGCAGGTAGCTGCTTCATCTGTGTCTGATAATGGCCGTAATGACGAAATTCAAGAAATTCAAGGCGACAGTGTATAA 1668 0.4323 MMRLQSYAGLSFIATLAVIYHAFHSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMVFLLLLDGLFLYSSMKQLIQTWQASVSLFFAFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGVPLHLIRELYETFRNFKVRVADYVRYRKITSNMNDRFPDANPEELNASDPTCIICREEMTTAKKLVCGHFFHVHCLRSWLERQNTCPICRALVVPPENGATTAGGQHGSQSDQQGTGTGTGTGTSTGSSAQAEAGSGVATDKLSRHQARLRALAAAASMYEKSFVYPSAPSLACAPGYTVHPAVQRPAAESSSTEQHTSSEQAQRQVVTPFGSMNVSFHPMGPFLFPPPTHVANGNYGEGSGSDPNAPNPLLEAQRIQHQIEVLEHQLQILKASVEENVSEGKPSSSSKGKQVAASSVSDNGRNDEIQEIQGDSV 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01374 555 MobiDBLite consensus disorder prediction 426 444 - -
Accr13g01374 555 MobiDBLite consensus disorder prediction 342 375 - -
Accr13g01374 555 PANTHER RING ZINC FINGER PROTEIN 1 513 - -
Accr13g01374 555 MobiDBLite consensus disorder prediction 515 555 - -
Accr13g01374 555 SUPERFAMILY RING/U-box 272 336 - -
Accr13g01374 555 Coils Coil 494 514 - -
Accr13g01374 555 MobiDBLite consensus disorder prediction 519 555 - -
Accr13g01374 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Accr13g01374 555 MobiDBLite consensus disorder prediction 467 490 - -
Accr13g01374 555 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Accr13g01374 555 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Accr13g01374 555 MobiDBLite consensus disorder prediction 340 383 - -
Accr13g01374 555 MobiDBLite consensus disorder prediction 425 444 - -
Accr13g01374 555 Pfam Ring finger domain 291 330 IPR001841 -
Accr13g01374 555 SMART ring_2 292 329 IPR001841 -
Accr13g01374 555 CDD RING-H2_synoviolin 289 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01374 Accr-Chr13 20574904 20583492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01374 1 537 C3H Transcription Factor Family AT3G16090 63.333 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01374 K10601 - gmx:100816441 757.673