Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01373 ATGGTTGCTTTTTCTGTGTACAGCGAAATGATGAGGCTACAGTCATATGCGGGGCTTAGTTTCATTGCAACTCTAGCTGTTATATATCATGCTTTCCACAGCAGAGGTCAATTTTATCCAGCGATGGTTTTTCTGTCAACTTCCAAGATCAGCTTGGTACTTCTTCTCAACATGGGTCTAGTCATTATGTGTCTTTTATGGCAATTAACAAAGAAGGTGTTCCTTGGCACACTCCGAGAGGCGGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATTCTCTTTGCCATCACCATTTTTAGGCAGGATTTCTCTGTTACATTCCTTGCTATGGTCACAGCACTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAAAGAGTTGAATATATTGAGACCACTCCTACCGTGCCCTTGTTGTCTCACATTCGAATTGTGTCTTTTATGGTTTTCCTCCTGCTTCTTGATGGACTCTTTCTATATAGTTCCATGAAACAATTGATACAAACTTGGCAGGCTTCAGTTTCCCTCTTTTTTGCTTTCGAGTACATGATTCTGGCAACAACAACAGTGTCAATTTTTGTAAAATACCTTTTCTATGTCAGTGACATGCTTATGGAAGGACAATGGGAAAAGAAACCAGTCTTCACATTCTACTTGGAACTCATTAGGGATTTGCTTCACTTGTCTATGTATATGTGTTTCTTCCTTGTAATTTTCGTAAATTATGGTGTGCCTTTGCACTTAATAAGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGACTACGTACGTTATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAAACCCAGAAGAGCTTAATGCAAGTGATCCTACATGTATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTGTATGCGGGCATTTTTTTCATGTGCATTGCCTCCGGTCATGGTTGGAGCGTCAAAATACTTGCCCTATCTGCAGAGCCTTGGTTGTACCGCCTGAAAATGGGGCAACTACTGCTGGAGGGCAGCATGGGTCACAGTCAGACCAACAGGGAACAGGAACAGGAACAGGAACAGGAACTGGAACAAGTACTGGAAGCTCAGCTCAAGCTGAAGCTGGCAGTGGGGTGGCTACTGATAAATTGAGTCGTCATCAAGCTAGACTTCGAGCTTTAGCTGCCGCTGCTTCAATGTATGAGAAGTCTTTCGTATACCCATCTGCACCTTCTTTAGCATGTGCCCCTGGATACACTGTTCATCCTGCTGTTCAAAGACCCGCCGCTGAATCTTCTAGTACAGAACAACATACTTCAAGCGAACAAGCACAACGACAGGTTGTCACCCCTTTTGGATCAATGAATGTATCCTTCCATCCAATGGGACCGTTTCTTTTTCCTCCTCCAACACATGTAGCTAATGGGAATTATGGAGAGGGATCTGGATCTGATCCAAATGCGCCAAACCCTCTGCTGGAAGCTCAAAGAATTCAACACCAGATTGAGGTTCTGGAACATCAGCTCCAGATTCTGAAGGCAAGTGTTGAGGAAAATGTAAGTGAGGGCAAGCCATCATCAAGTAGCAAAGGTAAGCAGGTAGCTGCTTCATCTGTGTCTGATAATGGCCGTAATGACGAAATTCAAGAAATTCAAGGCGACAGTGTATAA 1701 0.4321 MVAFSVYSEMMRLQSYAGLSFIATLAVIYHAFHSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMVFLLLLDGLFLYSSMKQLIQTWQASVSLFFAFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGVPLHLIRELYETFRNFKVRVADYVRYRKITSNMNDRFPDANPEELNASDPTCIICREEMTTAKKLVCGHFFHVHCLRSWLERQNTCPICRALVVPPENGATTAGGQHGSQSDQQGTGTGTGTGTGTSTGSSAQAEAGSGVATDKLSRHQARLRALAAAASMYEKSFVYPSAPSLACAPGYTVHPAVQRPAAESSSTEQHTSSEQAQRQVVTPFGSMNVSFHPMGPFLFPPPTHVANGNYGEGSGSDPNAPNPLLEAQRIQHQIEVLEHQLQILKASVEENVSEGKPSSSSKGKQVAASSVSDNGRNDEIQEIQGDSV 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01373 566 PANTHER RING ZINC FINGER PROTEIN 9 524 - -
Accr13g01373 566 SMART ring_2 301 338 IPR001841 -
Accr13g01373 566 MobiDBLite consensus disorder prediction 478 501 - -
Accr13g01373 566 CDD RING-H2_synoviolin 298 339 - -
Accr13g01373 566 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 273 348 - -
Accr13g01373 566 Pfam Ring finger domain 300 339 IPR001841 -
Accr13g01373 566 MobiDBLite consensus disorder prediction 526 566 - -
Accr13g01373 566 MobiDBLite consensus disorder prediction 436 455 - -
Accr13g01373 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 346 IPR013083 -
Accr13g01373 566 MobiDBLite consensus disorder prediction 530 566 - -
Accr13g01373 566 MobiDBLite consensus disorder prediction 351 386 - -
Accr13g01373 566 Coils Coil 505 525 - -
Accr13g01373 566 SUPERFAMILY RING/U-box 281 345 - -
Accr13g01373 566 ProSiteProfiles Zinc finger RING-type profile. 301 339 IPR001841 -
Accr13g01373 566 MobiDBLite consensus disorder prediction 437 455 - -
Accr13g01373 566 MobiDBLite consensus disorder prediction 349 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01373 Accr-Chr13 20574904 20583519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01373 10 548 C3H Transcription Factor Family AT3G16090 62.731 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01373 K10601 - gmx:100816441 756.903