Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01340 ATGAAACTCTCTTTCTCTGTGCAATCGAAATCAAATTCCAAGTCAAACCCCATCAGGCCCTCCAAAAAATTCGACGCCGCCGCTACCGATACTAAAGATGGAAACTCCAAGGCGAGAGAGTATGTTACAGAGTTCGATGCATCGAAATCCTCTTCTGATCCTAACAAATCCACCATGGTTATTCCCCCTATTGAGAACGAGTGGAATATTGGAAGGTCCCACAAGAGGATGAAGAATCTAGACTTACCCATCACTGAATCTAATGGAACCGAGGTGGGATTTGAGCTAGATACGTCGACAGTTGTGGAACCCGGTTCGGACATGTCTTATGGTCTGAATCTCCGGCAGACAAAGAAGAATGATGGGGACGGTGAGAAACCTGCTACTGGCAGTGGTGGTGATAATCACGAAAGGTCGCGGCCTGTTTCTGTTGACTCTGTGTTGCTGCAGAAATTTAAGGATGATATGAAGAGATTACCAGACGATAGAGGTTTTGATGAGTTCGAAGATGTTGCTGTTGAGGGTTTTGGTGCAGCTTTGCTTGCTGGCTATGGATGGCGTGAAGGAATGGGCATTGGAAAGAATGCGAAGGAGGATGTGAAAGTTGTACAGTATGAGAGGAGGACTGCCAAAGAAGGGTTGGGTTTTGTTAGTGATCATGCTCATAAGCGGAGTTCGAAGGAGGAAGTGAAGAAACCTAAGGATTATGGTAGAGATAGTTCGTTCTTGGGGAAGATTGTTAGGATAGTTGAGGGCAGAAATGCAGGTCTGAAGGGCAAAATTGTAGAAGTTGAAGATAAATGGGTTATTTTAAAGCTTTCTAAGAGTGAAGAGGAAGTAAAAGTGGACCTTGGTGATTTTGTAGAACTGGGTTCTACTGAGGAAGAGAGGTTTTTGAGGAAATTGAAGGAGTTAAAGATTCAACATGCTGATGAAGATAGTGATTCAAGGAAAAAACGCAGTAGAGATGAGGGAAGGAGAGGCCGTGATCAGGCTGTAGTTGATGTTAAAAGAGATAGTAGGAAGGAAGAGCAGGCGAAGAAACAAGTTTCATGGCTTACAAGTCATATTCGGGTCAGGGTTATTAGCAAAAGTTTCAAAGGAGGGCGATTATATTTGAAGAAGGGGCAGGTCTTGGACGTTGTTGGGCCTACGACTTGTGATATATCGATGGATAATAGCAAGGAGATCATCCAGGGGGTTTCCCAAGACTTTCTTGAGACTTCTATCCCTCGCCGAGGGGGACCAGTTCTTGTATTATATGGTAAACATAAAGGTGTTTATGGGAGTCTAGTTGAGAGGGATTTGGACAAAGAAATGGCTGTTGTTAGAGATGCTGATACCCATGCGCTGGTCAATGTGCCGCTTGAACAAATTGCAGAGTTTATTGGGGATCCAAGTATCTTGGGATACTGA 1416 0.4407 MKLSFSVQSKSNSKSNPIRPSKKFDAAATDTKDGNSKAREYVTEFDASKSSSDPNKSTMVIPPIENEWNIGRSHKRMKNLDLPITESNGTEVGFELDTSTVVEPGSDMSYGLNLRQTKKNDGDGEKPATGSGGDNHERSRPVSVDSVLLQKFKDDMKRLPDDRGFDEFEDVAVEGFGAALLAGYGWREGMGIGKNAKEDVKVVQYERRTAKEGLGFVSDHAHKRSSKEEVKKPKDYGRDSSFLGKIVRIVEGRNAGLKGKIVEVEDKWVILKLSKSEEEVKVDLGDFVELGSTEEERFLRKLKELKIQHADEDSDSRKKRSRDEGRRGRDQAVVDVKRDSRKEEQAKKQVSWLTSHIRVRVISKSFKGGRLYLKKGQVLDVVGPTTCDISMDNSKEIIQGVSQDFLETSIPRRGGPVLVLYGKHKGVYGSLVERDLDKEMAVVRDADTHALVNVPLEQIAEFIGDPSILGY 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01340 471 Pfam G-patch domain 160 218 IPR026822 -
Accr13g01340 471 MobiDBLite consensus disorder prediction 25 46 - -
Accr13g01340 471 MobiDBLite consensus disorder prediction 1 64 - -
Accr13g01340 471 Gene3D - 356 410 - -
Accr13g01340 471 ProSiteProfiles G-patch domain profile. 173 219 IPR000467 GO:0003676
Accr13g01340 471 SMART kow_9 410 437 IPR005824 -
Accr13g01340 471 SMART kow_9 240 267 IPR005824 -
Accr13g01340 471 MobiDBLite consensus disorder prediction 1 19 - -
Accr13g01340 471 MobiDBLite consensus disorder prediction 102 116 - -
Accr13g01340 471 MobiDBLite consensus disorder prediction 310 342 - -
Accr13g01340 471 SMART G-patch_5 171 217 IPR000467 GO:0003676
Accr13g01340 471 PANTHER G PATCH AND KOW-CONTAINING 1 467 IPR045166 GO:0000398
Accr13g01340 471 MobiDBLite consensus disorder prediction 118 141 - -
Accr13g01340 471 Pfam KOW motif 244 269 IPR005824 -
Accr13g01340 471 MobiDBLite consensus disorder prediction 100 146 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01340 306 444 C2H2 Transcription Factor Family AT1G55460 31.293 1.19e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01340 K13101 - qsa:O6P43_026128 550.051