Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01338 ATGTACACAAGAAGGCTTCGAAGGTCGGAGTCTGGTGTCACATCTACGGATACGAAGTGTTCAGACAAAGCAAGAGCAGCTAAAGTTTCTGCAAGAGAGAAAAAAGAAACAACAGGCAAAGAAGATTTATTGAGCAAACTGGGGAAAGTAGATTTGGCAGAGCAAGAATGGGTTAATAAGATTCCAGAGTGTCCTGTTTTCTGCCCATCAGAACAGGAGTTTGAGGATCCCTTAGTTTATCTGCAGAAGATTGCTCCTGAGGCACAAAAATATGGAATGTGCAAAATTGTTTCTCCTCTAAATGCCTCTATTCCAGCTGCTGTTGTCTTAATGAAAGAGATAGGAAATTTCAAGTTTGAAACCATTGTACAACCTCTTGGGTATTCCGAATTGAACAAGGACAAGGACACAATCTATTCTCTCAGAGGCAGAAAATACACTTATCGTGATTTTGAGACTTTGGCGAACAAGGCATTTCTCAGTCGGTTTTACAGTTCAGGAAGTCTTCCTTCTTCATATCTGGAAAAGTTATTCTGGCATGAGATGGAGCATGGAGAGATGGGAACGGTTGAGTATGGAGTCAATGTTCAAGGTAGTGCTTTTTCATGTGATCCTCATGACAAGCTTGGAAAAAGCAAATGGAATTTGAAGACCTTCTCGCGGCTGAAGAAATCTACATTGCAGTTCATTGACAGAGAGATTCCTGGAATAACTGACCCTATGCTTTATATTGGAATGCTATTCAGCATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATTAATTATCATCACTCAGGAGCAAACAAAACTTGGTACGGCGTTCCCAGCTACACAGCCTCTCGATTTGAAGAGGTCGCCTTAAATCATGTGTTCCACAATAAGCTTTTATCAAAGCACAATGGACAGGCCGGTGCCTTCGAAACTCTTGCTCATAAAACAACCATGTTTTCACCAAATGTCCTGCTCCAACATGGTGTTCCAGTTTACAAGGCTGTACAGAAGCCTGGAGAGTTTGTCATCACCTTTCCTAAATCATATCATGCTGGATTTAGCCATGGATTCAACTGTGGAGAAGCAGTAAACTTTGCTGTGAGTGATTGGTTTCCATTAGGGGCTGAAGCTACAAGGCGTTATGCACATCTTGGAAAGATGCCTATTATTCCCTTTGAGGAACTTCTTTGTAATGAAGCAATGCTAATGTACAAGGCACCAAATAATCTCAAAGGCTCGTCCAATAACAAACTCGATTTGGAATCCGACCGCTCTACTAAGCTATCTTTTATGCAGCTCATGCGATTTTACGACGAGGCCCTTTCAAGACTAAGAAAAAGTTCAATCGAGTACTCTTCAAGTTCTTCAAATTCTCTTGGCACTGTGGTATGCAGCCTCTGCAGTAGAGACTGTTATGTGGCTTTCTTGCTCTGCAATAAATGCTACTCTCTTCCCATTTGTATTTTCCATGATGAAACTGATACTCATAGTTGTTCATGCGGTAGACAATGTACACTTTACAAGAGAGATGAAATGTTGGCTCTGATGGATGTTGCCACAAGTTTTGAACTGGAAAAAGACATTTTTTTGGAAGTTCAAAGACATAGTGGAGCAAATATACTGTCAAAGACATCCTTTTTTACCGATCAAGAAAGTATTCAAGATAACAAGAGCAATCATTGCCATGAAGAAAGAATCCACAGTGGAACTGTTTCTTCTGATGTGGAGAGAGCTTCAACCTCAAAAAAGAAAAGAAAAGAGGACTCTATTGAGCTCAACTTGGAAGATAAGAAGAAGCTAGTGTTGAAATTTTGTAGAAGGAGAGGGCCTCCAACAGTGATAGATGAAGATAATGATGAGAAGGGAGCTCAAGAGAAGTCTAAATTACAAAGAAATGATTCAAATTTGATTCTAACTACCACAACAGAATCTTTTCAATATAGCTTGAATCAACCCTTCTCTTAA 1965 0.4 MYTRRLRRSESGVTSTDTKCSDKARAAKVSAREKKETTGKEDLLSKLGKVDLAEQEWVNKIPECPVFCPSEQEFEDPLVYLQKIAPEAQKYGMCKIVSPLNASIPAAVVLMKEIGNFKFETIVQPLGYSELNKDKDTIYSLRGRKYTYRDFETLANKAFLSRFYSSGSLPSSYLEKLFWHEMEHGEMGTVEYGVNVQGSAFSCDPHDKLGKSKWNLKTFSRLKKSTLQFIDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYTASRFEEVALNHVFHNKLLSKHNGQAGAFETLAHKTTMFSPNVLLQHGVPVYKAVQKPGEFVITFPKSYHAGFSHGFNCGEAVNFAVSDWFPLGAEATRRYAHLGKMPIIPFEELLCNEAMLMYKAPNNLKGSSNNKLDLESDRSTKLSFMQLMRFYDEALSRLRKSSIEYSSSSSNSLGTVVCSLCSRDCYVAFLLCNKCYSLPICIFHDETDTHSCSCGRQCTLYKRDEMLALMDVATSFELEKDIFLEVQRHSGANILSKTSFFTDQESIQDNKSNHCHEERIHSGTVSSDVERASTSKKKRKEDSIELNLEDKKKLVLKFCRRRGPPTVIDEDNDEKGAQEKSKLQRNDSNLILTTTTESFQYSLNQPFS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01338 654 ProSiteProfiles JmjC domain profile. 208 382 IPR003347 -
Accr13g01338 654 SMART JmjN_1 63 104 IPR003349 -
Accr13g01338 654 PANTHER LYSINE-SPECIFIC DEMETHYLASE 56 588 - -
Accr13g01338 654 MobiDBLite consensus disorder prediction 609 635 - -
Accr13g01338 654 SUPERFAMILY Clavaminate synthase-like 142 400 - -
Accr13g01338 654 ProSiteProfiles JmjN domain profile. 64 105 IPR003349 -
Accr13g01338 654 Pfam jmjN domain 65 97 IPR003349 -
Accr13g01338 654 Gene3D Cupin 64 431 - -
Accr13g01338 654 MobiDBLite consensus disorder prediction 609 628 - -
Accr13g01338 654 Pfam JmjC domain, hydroxylase 241 365 IPR003347 -
Accr13g01338 654 SMART cupin_9 208 382 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01338 Accr-Chr13 19818475 19822788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01338 61 527 JUMONJI Transcription Factor Family AT2G34880 31.895 1.33e-58 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Accr13g01338 JmjC 6.2e-41 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01338 - - pcin:129313895 992.26