Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01333 ATGGACGGAGTTCATGGCGGTGTGGTGAATCCCGCGGCGGCAAATGTGAATTCTCTGCCGCCATTCCTTAGCAAGACCTATGACATGGTCGAAGACCCTTCAATAAACTCGGTGGTCTCGTGGAGTGATAATAACAACAGTTTTGTTGTTTGGGATGTGCCCGAGTTCGCTAGGGAGATCTTGCCCAAGTATTTCAAGCACAACAATTTCTCCAGCTTCGTCAGGCAACTGAATACTTACGGTTTTAGAAAGGTTGATCCAGATCGCTGGGAGTTCGCAAATGAAGGATTTTTAAGGGGTCAGAAGCAACTTCTGAAGAGTATCAGTAGGAGGAAAGCTACTCAAGTGAATGGCAATCAACAGCCATCTCCTTCACAGAGCAAACCTGTTGGGGCATGTATTGAGGTTGGAAAGTTTGGGCTTGATGAAGAGGTTGAAAGATTGAAAAGGGATAAGAATGTTCTTATGCAAGAACTTGTTAGGTTGAGACAACAGCAACAAACAACCGATAACCAATTGCAAAGTGTTGGGCAACGTGTGCAGGTTATGGAGCAGCGTCAGCAACAAATGATGTCATTTCTGGCAAAGGCCATGCAAAGCCCAGGATTCATGGCACAGTTTGTACAGCAGCAGAGTGACAGTAACAGGCATATTGCTGGAGGCAATAAAAAGAGGAGACTCCACAGGCAGCAAGAAGATACATTACCCTCTGATCATCTCTATAATGCTCTTGGTGGACGTGTTTTGAAATATCAACCTTCTATGAATGAGGCTGCAAAAGCATTATTGCGCCAGCTATTGCAAATGAATGCTTCTTCAAGGAGGGAATCATCAATAAATAACCCTGATGCTTTTCTCATTGATGATATTCCTTCTGCCATTCCATTAGATAGTGGGAGTACCTCTAGTCGGGCTTCAGGAGTGACTCTTTCTGAGGTTCCACCTGCTTCTGGCCAGTCTTATATGGCCGGGCAATCACAGTTGCCTGTTAATCGTGTTACCACCAACATATCTCATTTGCAATCTTCCCGTGCTGTGTTGACTGATCCTGTTAAAGTAGCTGAATTTCCGGGATTAAATTTGCATAATTGCCCAGAGAATGTTTTGGGTATTGGTGAAGTCCAAGGTGTGGAGACAGAGAGCAGTTTAGTGAATCCTGAACTCACTTTTGCGGGGCCTGACACTGGGCATGCAGGGGACATAGACATGATGTCAGCAGTTTTGGATGGGGCACAGTCTGTAGAAGTAGAGGCTGAAGCCTTTTCACCTGATCCAGATGGAATTTCTAGGCTCCCAAGCATTAATGATGTTTTCTGGGAACAGTTTCTCACGGGAAGTCCGCTTACAGGTGATACAGATGACATTAGTTCTTCCCCTCTTGGATGTGGTTTGACCACGGAAGGGGAATCTCCATCTAGAGAGGATAATGGACAGGAAAAGTTGGATAAGATAAAACACATTGATCATCTTGCTCAACAGATGGAACTTCTTGCTTCCAACAATTCGTAA 1509 0.448 MDGVHGGVVNPAAANVNSLPPFLSKTYDMVEDPSINSVVSWSDNNNSFVVWDVPEFAREILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKATQVNGNQQPSPSQSKPVGACIEVGKFGLDEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQSVGQRVQVMEQRQQQMMSFLAKAMQSPGFMAQFVQQQSDSNRHIAGGNKKRRLHRQQEDTLPSDHLYNALGGRVLKYQPSMNEAAKALLRQLLQMNASSRRESSINNPDAFLIDDIPSAIPLDSGSTSSRASGVTLSEVPPASGQSYMAGQSQLPVNRVTTNISHLQSSRAVLTDPVKVAEFPGLNLHNCPENVLGIGEVQGVETESSLVNPELTFAGPDTGHAGDIDMMSAVLDGAQSVEVEAEAFSPDPDGISRLPSINDVFWEQFLTGSPLTGDTDDISSSPLGCGLTTEGESPSREDNGQEKLDKIKHIDHLAQQMELLASNNS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01333 502 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01333 502 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01333 502 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01333 502 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01333 502 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01333 502 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01333 502 Coils Coil 256 276 - -
Accr13g01333 502 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Accr13g01333 502 MobiDBLite consensus disorder prediction 448 471 - -
Accr13g01333 502 MobiDBLite consensus disorder prediction 216 235 - -
Accr13g01333 502 MobiDBLite consensus disorder prediction 448 481 - -
Accr13g01333 502 Coils Coil 138 165 - -
Accr13g01333 502 Gene3D - 14 112 IPR036388 -
Accr13g01333 502 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 314 IPR027725 -
Accr13g01333 502 FunFam Heat shock transcription factor 1 15 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01333 Accr-Chr13 19727326 19732210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01333 16 499 HSF AT5G16820 53.036 5.23e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr13g01333 HSF_DNA-bind 2.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01333 K09419 - qsa:O6P43_001765 597.045