Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01332 ATGATGGACGGAGTTCATGGCGGTGTGGTGAATCCCGCGGCGGCAAATGTGAATTCTCTGCCGCCATTCCTTAGCAAGACCTATGACATGGTCGAAGACCCTTCAATAAACTCGGTGGTCTCGTGGAGTGATAATAACAACAGTTTTGTTGTTTGGGATGTGCCCGAGTTCGCTAGGGAGATCTTGCCCAAGTATTTCAAGCACAACAATTTCTCCAGCTTCGTCAGGCAACTGAATACTTACGGTTTTAGAAAGGTTGATCCAGATCGCTGGGAGTTCGCAAATGAAGGATTTTTAAGGGGTCAGAAGCAACTTCTGAAGAGTATCAGTAGGAGGAAAGCTACTCAAGTGAATGGCAATCAACAGCCATCTCCTTCACAGAGCAAACCTGTTGGGGCATGTATTGAGGTTGGAAAGTTTGGGCTTGATGAAGAGGTTGAAAGATTGAAAAGGGATAAGAATGTTCTTATGCAAGAACTTGTTAGGTTGAGACAACAGCAACAAACAACCGATAACCAATTGCAAAGTGTTGGGCAACGTGTGCAGGTTATGGAGCAGCGTCAGCAACAAATGATGTCATTTCTGGCAAAGGCCATGCAAAGCCCAGGATTCATGGCACAGTTTGTACAGCAGCAGAGTGACAGTAACAGGCATATTGCTGGAGGCAATAAAAAGAGGAGACTCCACAGGCAGCAAGAAGATACATTACCCTCTGATCATCTCTATAATGCTCTTGGTGGACGTGTTTTGAAATATCAACCTTCTATGAATGAGGCTGCAAAAGCATTATTGCGCCAGCTATTGCAAATGAATGCTTCTTCAAGGAGGGAATCATCAATAAATAACCCTGATGCTTTTCTCATTGATGATATTCCTTCTGCCATTCCATTAGATAGTGGGAGTACCTCTAGTCGGGCTTCAGGAGTGACTCTTTCTGAGGTTCCACCTGCTTCTGGCCAGTCTTATATGGCCGGGCAATCACAGTTGCCTGTTAATCGTGTTACCACCAACATATCTCATTTGCAATCTTCCCGTGCTGTGTTGACTGATCCTGTTAAAGTAGCTGAATTTCCGGGATTAAATTTGCATAATTGCCCAGAGAATGTTTTGGGTATTGGTGAAGTCCAAGGTGTGGAGACAGAGAGCAGTTTAGTGAATCCTGAACTCACTTTTGCGGGGCCTGACACTGGGCATGCAGGGGACATAGACATGATGTCAGCAGTTTTGGATGGGGCACAGTCTGTAGAAGTAGAGGCTGAAGCCTTTTCACCTGATCCAGATGGAATTTCTAGGCTCCCAAGCATTAATGATGTTTTCTGGGAACAGTTTCTCACGGGAAGTCCGCTTACAGGTGATACAGATGACATTAGTTCTTCCCCTCTTGGATGTGGTTTGACCACGGAAGGGGAATCTCCATCTAGAGAGGATAATGGACAGGAAAAGTTGGATAAGATAAAACACATTGATCATCTTGCTCAACAGATGGAACTTCTTGCTTCCAACAATTCGTAA 1512 0.4478 MMDGVHGGVVNPAAANVNSLPPFLSKTYDMVEDPSINSVVSWSDNNNSFVVWDVPEFAREILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKATQVNGNQQPSPSQSKPVGACIEVGKFGLDEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQSVGQRVQVMEQRQQQMMSFLAKAMQSPGFMAQFVQQQSDSNRHIAGGNKKRRLHRQQEDTLPSDHLYNALGGRVLKYQPSMNEAAKALLRQLLQMNASSRRESSINNPDAFLIDDIPSAIPLDSGSTSSRASGVTLSEVPPASGQSYMAGQSQLPVNRVTTNISHLQSSRAVLTDPVKVAEFPGLNLHNCPENVLGIGEVQGVETESSLVNPELTFAGPDTGHAGDIDMMSAVLDGAQSVEVEAEAFSPDPDGISRLPSINDVFWEQFLTGSPLTGDTDDISSSPLGCGLTTEGESPSREDNGQEKLDKIKHIDHLAQQMELLASNNS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01332 503 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
Accr13g01332 503 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01332 503 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01332 503 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01332 503 Gene3D - 15 113 IPR036388 -
Accr13g01332 503 MobiDBLite consensus disorder prediction 217 236 - -
Accr13g01332 503 Coils Coil 139 166 - -
Accr13g01332 503 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01332 503 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01332 503 FunFam Heat shock transcription factor 1 16 113 - -
Accr13g01332 503 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 315 IPR027725 -
Accr13g01332 503 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr13g01332 503 Coils Coil 257 277 - -
Accr13g01332 503 MobiDBLite consensus disorder prediction 449 472 - -
Accr13g01332 503 MobiDBLite consensus disorder prediction 449 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01332 Accr-Chr13 19727326 19732213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01332 17 500 HSF AT5G16820 53.036 3.50e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr13g01332 HSF_DNA-bind 2.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01332 K09419 - qsa:O6P43_001765 597.045