Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01264 ATGAGCAATTCATCATCACAGGTTATCACTTGCAAAGGAGCAGTATGTTGGGGAATAGGAGAGGGAGTGAAGGTGGAAGACATACAAGTAGATCCTCCTAAAGCTACAGAAGTTAGAGTTAAGATGCTTTGTGCTAGTGTTTGCCACACAGACATATTTGCCACTCAAGGATACATACATGCTAATTATCCTCAAGTACTAGGCCATGAAGGAATTGGGGTTGTTGAGAGCAAAGGAGAGGAAGTGAAGAATGTAGAGGTGGGGGATGTGGTGATTCCTTTGTACATATCAGAGTGTGGAGAATGTGAAGTGTGCATAAAAGGAAAAACAAACCTTTGCATGAAATACCCTATAAGGTTGAGTGGGTTGATGCCAGATGATACTTCTAGAATAACTGTGAGAGGTCACAAGGCATATCATCTCATGAGTTGTGCCACGTGGTGTGAGTACATGGTGGTTGACGCTAATTATATTCTCAAAGTTGATCCAGCCATTGATGCAGCTCATGGAAGCTTCATTTCTTGTGGCTTCAGTACTGGTTTTGGAGCTGCCTGGAAGGAAGCCATGGTTGAACAAGGATCTAGTGTTGCAATTTTTGGTCTTGGTACTGTTGGATTAGGGGCTGTAAGTGCAGCTAAATTGATGGGGGCAACAAAGATAATTGGGATTGACATAAATGAGAAGAAGAGAGAAAAAGGAGAAGCTTTTGGAATGACTGACTTTATAAATCCTGATAAATTATCTGACAAGCCTCTTTCACAACAAGTCAAAGAACTAAGTGGTGAAATGGGAGTAGATTATTCTATTGAGTGCACTGGAGTTCCCTCTTTGCTCAATGAAGCCATGGAATCTACTAAAGTGGGTGTAGGCAAAACAGTGGTAGTAGGTGCTGGAGCTGAATCTGTACAGTTAAGTTATGCTACCATTCTTTATGGAAGAACATTAAAGGGTTCTGTATTTGGAGGCATAAAGCCCATCTCTGATCTACCTTTTATAGCTCACAAGTGTCACACAAAGGAAATTCCAGTTGATGAACTTTTGACCCATGAGATTCTCTTGGAAGATATAAGCAAAGCATTCGAGCTAATGAGATATCCAGATTGTGTCAAAGTTTTGCTCAAGATGTGA 1128 0.4096 MSNSSSQVITCKGAVCWGIGEGVKVEDIQVDPPKATEVRVKMLCASVCHTDIFATQGYIHANYPQVLGHEGIGVVESKGEEVKNVEVGDVVIPLYISECGECEVCIKGKTNLCMKYPIRLSGLMPDDTSRITVRGHKAYHLMSCATWCEYMVVDANYILKVDPAIDAAHGSFISCGFSTGFGAAWKEAMVEQGSSVAIFGLGTVGLGAVSAAKLMGATKIIGIDINEKKREKGEAFGMTDFINPDKLSDKPLSQQVKELSGEMGVDYSIECTGVPSLLNEAMESTKVGVGKTVVVGAGAESVQLSYATILYGRTLKGSVFGGIKPISDLPFIAHKCHTKEIPVDELLTHEILLEDISKAFELMRYPDCVKVLLKM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01264 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Accr13g01264 375 Pfam Zinc-binding dehydrogenase 204 322 IPR013149 -
Accr13g01264 375 Gene3D - 180 318 - -
Accr13g01264 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 334 IPR036291 -
Accr13g01264 375 CDD liver_alcohol_DH_like 9 374 - -
Accr13g01264 375 Pfam Alcohol dehydrogenase GroES-like domain 36 161 IPR013154 -
Accr13g01264 375 FunFam S-(hydroxymethyl)glutathione dehydrogenase 180 318 - -
Accr13g01264 375 PANTHER ALCOHOL DEHYDROGENASE 7 364 - -
Accr13g01264 375 FunFam alcohol dehydrogenase 1-like isoform X1 19 179 - -
Accr13g01264 375 Gene3D - 15 370 - -
Accr13g01264 375 SUPERFAMILY GroES-like 5 187 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01264 Accr-Chr13 17349000 17354133 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01264 37 315 Monolignol Biosynthesis Gene Families AT4G37980 27.305 5.38e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01264 K00121 - gmx:100798341 519.62