Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr13g01253 | ATGGCAAGCAGCCCCCAAGTTATAACATGCAAAGGAGCAATATGCTGGGGAACAGGAGAGGCAGTAAAGGTGGAAGAGATACAAGTAGATCCTCCTAAAGCTTCTGAAGTTCGTGTTAAGATGCTTTTTGCTAGTATATGCCATACAGACTTCTTGAGGGCTCAAGGTTATCCATATCCCTGTTTTCCTCTAGCACTGGGGCATGAAGGTGTAGGTGTTGTGGAGAGCGTAGGGGAAAAAGTGACGAATTTCAAAGGAGGAGATGTAGTGATTCCTATATACGTTGGAGAATGTGGAGAATGTGAGAATTGTGTCTCGAAGGAATCAAACATTTGCCTGAGATATCCTATAAGTGTGAGTGGCCTAATGCCTGATGGCACATCAAGGATTTCTGTTGGAGGCCAAAAGGCATACCATGTTTTTAGCTGCTCAACATGGTGTGAGTATATGGTTAGTGATGAAAACTATCTAATGAAAGTTGATCCAAATATTGATTTGGTTCATGCTAGCTTCATCTCTTGTGGATTCTCTACTGGTTTTGGAGCTTCTTGGAAGACAGCCCAAATTCAAAGTGGATCTTCTGTGGCTGTTTTCGGTCTTGGAGCTGTTGGATTAGGGGCGATAAGTGGAGCCAAGCTGATGGGAGCAACAAAGATAATTGGGATTGACATAAATGAGAAGAAGAGAGAAAAAGGAGAAGTTTTTGGAATGACAAATTTTATAAATCCAAAGGATCATTCTGATAAGCCTTCTTCTCAATTGGTGAAGGACCTCACCAATGGATTGGGTGTGGATTATGCTGTTGATTGCACTGGTGTTGCCGCTTTGGTTACTCAAGCACTAGAATCTACCAAAGTGGGGAAAGGAAAGGTAATAGCAGTTGGTGCAGGAATGGAAGAATTTGTGCAAGTCAACTGGTTGGGTCTTCTTCTTGGAAGAACTTTGAGGGGTTCGATTTTTGGAGGCTTGAAACCCAAATCTGACCTTTCCACTGTAGCCACCAAATGCCAAAACAAGGAGTTACCTCTTGATGAGCTTTTCACCCATGAAGTCCCTTTGACAGAGATAAACAAAGCTTTTGAGCTCTCGAAACAGCCAGATTGTGTCAAAGTTGTTATCAAGATATGA | 1128 | 0.4238 | MASSPQVITCKGAICWGTGEAVKVEEIQVDPPKASEVRVKMLFASICHTDFLRAQGYPYPCFPLALGHEGVGVVESVGEKVTNFKGGDVVIPIYVGECGECENCVSKESNICLRYPISVSGLMPDGTSRISVGGQKAYHVFSCSTWCEYMVSDENYLMKVDPNIDLVHASFISCGFSTGFGASWKTAQIQSGSSVAVFGLGAVGLGAISGAKLMGATKIIGIDINEKKREKGEVFGMTNFINPKDHSDKPSSQLVKDLTNGLGVDYAVDCTGVAALVTQALESTKVGKGKVIAVGAGMEEFVQVNWLGLLLGRTLRGSIFGGLKPKSDLSTVATKCQNKELPLDELFTHEVPLTEINKAFELSKQPDCVKVVIKI | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr13g01253 | 375 | SUPERFAMILY | GroES-like | 4 | 189 | IPR011032 | - | |
| Accr13g01253 | 375 | Pfam | Alcohol dehydrogenase GroES-like domain | 35 | 160 | IPR013154 | - | |
| Accr13g01253 | 375 | Pfam | Zinc-binding dehydrogenase | 202 | 325 | IPR013149 | - | |
| Accr13g01253 | 375 | Gene3D | - | 179 | 318 | - | - | |
| Accr13g01253 | 375 | FunFam | S-(hydroxymethyl)glutathione dehydrogenase | 179 | 318 | - | - | |
| Accr13g01253 | 375 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 67 | 81 | IPR002328 | GO:0008270|GO:0016491 | |
| Accr13g01253 | 375 | PANTHER | ALCOHOL DEHYDROGENASE | 6 | 367 | - | - | |
| Accr13g01253 | 375 | SMART | PKS_ER_names_mod | 17 | 373 | IPR020843 | GO:0016491 | |
| Accr13g01253 | 375 | SUPERFAMILY | GroES-like | 328 | 373 | IPR011032 | - | |
| Accr13g01253 | 375 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 164 | 333 | IPR036291 | - | |
| Accr13g01253 | 375 | Gene3D | - | 14 | 370 | - | - | |
| Accr13g01253 | 375 | FunFam | alcohol dehydrogenase 1-like isoform X1 | 18 | 178 | - | - | |
| Accr13g01253 | 375 | CDD | liver_alcohol_DH_like | 8 | 374 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr13g01253 | Accr-Chr13 | 17009929 | 17013201 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr13g01253 | 36 | 335 | Monolignol Biosynthesis Gene Families | AT4G37990 | 29.276 | 1.84e-19 | 87.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr13g01253 | K00121 | - | gmx:100798341 | 499.204 |