Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01252 ATGGCAAGCAGCCCCCAAGTTATAATATGCAAAGGAGCAATATGCTGGGGAACAGGAGAGGCAGTGAAGGTGGAAGAGATACAAGTAGATCCTCCTAAAGCTTCTGAAGTTCGTGTTAAGATGCTTTTTGCTAGTATATGCCATTCAGACTTCGTGAGGGCTCGAGGTCATCCATACCCCTGTTTTCCTCTAGCACTAGGGCATGAAGGTGTAGGTGTTGTGGAGAGCGTAGGGGAAAAAGTGACGAATTTTAAAGAAGGAGATGTAGTGATTCCTATATACGTCGGAGAATGTGGAGAATGTGAGAATTGTGTCTCGAAGGAATCAAACATTTGCCTGAGATATCCTTTAAGTGTGAGTGGCCTAATGCCTGATGGCACATCAAGGATTTCTGTTGGAGGCCAAAAGGCATACCATGTTTTCAGCTGCTCAACATGGTGTGAGTATATGGTTAGTGATGAAAACTATCTAATGAAAGTTGATCCAAGTATTGATTTGGCTCATGCTAGCTTCATCTCTTGTGGATTCTCTACTGGTTTTGGAGCTTCTTGGAAGACAGCCCAAATTCAAAGTGGATCATCTGTAGCTGTTTTTGGCCTTGGAGCTGTTGGATTAGGGGCAATAAGTGGAGCCAAGCTGATGGGAGCCGCCAAGATAATTGCGATTGACATAAATGAGAAGAAGAGAGAAAAAGGAGAAGTTTTTGGAATGACAAATTTTATAAATCCAAAGGATCATTCTAATAAGTCTGCTTCTCAACTGGTAAAGGACCTCACCAATGGAATGGGTGTGGATTATGCTGTTGAGTGCACTGGTGTTGCCGCTTTGCTTACTCAAGCCCTAGAATCAACCAAAGTGGGGAAAGGAAAGGCAATAGCAGTTGGTGCAGGAATCGAGGAATTTGTGCCAGTCAATTGGTTGGGTCTTCTTCTTGGAAGAACTTTGAGGGGTTCAATTTTTGGAGGCTTGAAACCCAAATCTGACCTTCCTACAGTAGCCACCAAATGCCAAAACAAGGAATTCCCTCTTGATGAGCTTTTTACCCATGAAGTCCCTTTGACAGAGATAAACAAAGCTTTTGAGCTCTTGAAACAGCCAGATTGTGTCAAAGTTATTATCAAGATATGA 1128 0.4282 MASSPQVIICKGAICWGTGEAVKVEEIQVDPPKASEVRVKMLFASICHSDFVRARGHPYPCFPLALGHEGVGVVESVGEKVTNFKEGDVVIPIYVGECGECENCVSKESNICLRYPLSVSGLMPDGTSRISVGGQKAYHVFSCSTWCEYMVSDENYLMKVDPSIDLAHASFISCGFSTGFGASWKTAQIQSGSSVAVFGLGAVGLGAISGAKLMGAAKIIAIDINEKKREKGEVFGMTNFINPKDHSNKSASQLVKDLTNGMGVDYAVECTGVAALLTQALESTKVGKGKAIAVGAGIEEFVPVNWLGLLLGRTLRGSIFGGLKPKSDLPTVATKCQNKEFPLDELFTHEVPLTEINKAFELLKQPDCVKVIIKI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01252 375 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Accr13g01252 375 SMART PKS_ER_names_mod 17 373 IPR020843 GO:0016491
Accr13g01252 375 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Accr13g01252 375 Gene3D - 179 318 - -
Accr13g01252 375 SUPERFAMILY GroES-like 4 189 IPR011032 -
Accr13g01252 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Accr13g01252 375 SUPERFAMILY GroES-like 326 373 IPR011032 -
Accr13g01252 375 Gene3D - 14 370 - -
Accr13g01252 375 PANTHER ALCOHOL DEHYDROGENASE 6 367 - -
Accr13g01252 375 Pfam Zinc-binding dehydrogenase 202 329 IPR013149 -
Accr13g01252 375 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 318 - -
Accr13g01252 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 337 IPR036291 -
Accr13g01252 375 CDD liver_alcohol_DH_like 8 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01252 Accr-Chr13 16982300 16985379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01252 35 367 Monolignol Biosynthesis Gene Families AT2G21730 27.596 2.83e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01252 K00121 - gmx:100798341 504.212