Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01245 ATGTCAAGCAGATCACAAGTTATAACATGCAAAGGAGCAATATGTTGGGGAATAGGAGAAGGAGTGAAATTGGAAGAGATACAAGTAGACCCTCCTAAAGCTTTTAAAGTTCGAGTTAAGATGCTTTGTGCCAGTTTGTGTCACACAGATATCTTGAGAACTCAAGGATTGAAAAGTCCCATGTTTCCTCTAGCACCAGGGCATGAAGGTGTAGGGGTTGTGGAGAGCATAGGGGAGGAAGTGACAAATCTCAAAGTAGGAGATATAGTTATTCCAATATATATTGGAGAATGCGAAGAATGTGAGAATTGTGTTTCAGAGGAAACAAACATGTGCATGAGATATCCTTTCATGGAGAATGGACTAATGCCTGATGGCACATCAAGGATTTCTGTTAGAGGACAAAAGGTGTGCCATGTGTTTAATTGCTCAACATGGTGTGAGTATATGGTTAGTGATGAAAACTACCTTATGAAAGTTGATCCAAGTATTGATTTGGCTCATGCTAGCTTCATCTCTTGTGGATTCTCTACTGGTTTTGGGGCTGCTTGGAAGACCGCCCAAGTTCAAAGTGGATCATCTCTGGTTGTTTTCAGTCTTGGAGCTGTTGGATTGGGGGCAATAAGTGGAGCCAAGATGATGGGAGCAACTAAGATAATTGGGATTGACATAAATGAGAAGAAGAAAAAGAAAGGAGAAGCTTTTGGAATGACACACTTCATAAATCCAAAGGATTATTCTCACAAGCCTTCTTCTCAGTTGGTGAAGGACCTTACCAGTGGATTGGGTGTAGATTATTCATTTGAGTGCGCTGGTGTTGCCTCTTTGCTCAATCAAGCCCTAGAATCCACAAAAGTGGGTAAAGGAAAGGCAATAGCAATTGGTGTAGGTACAGAAGAACTAGTGAAAATCAATTGGTTTGGTCTTTTTGGAAGAACTTTGAAGGGTTCAATTTTTGGAGGCTTGAAACCCAAATCTGACCTTTCTTTTTTAGCTGCCAAATGCAAAAACAAGGATTTGCCTCTCGATGAACTTCAGACCCATGAAATCCCTTTAACAGAGATAAGCAAAGCATTTGAACTATCAAAGCAGGAAGGATGTATCAAAGTTATCATCAAGATGTGA 1125 0.4036 MSSRSQVITCKGAICWGIGEGVKLEEIQVDPPKAFKVRVKMLCASLCHTDILRTQGLKSPMFPLAPGHEGVGVVESIGEEVTNLKVGDIVIPIYIGECEECENCVSEETNMCMRYPFMENGLMPDGTSRISVRGQKVCHVFNCSTWCEYMVSDENYLMKVDPSIDLAHASFISCGFSTGFGAAWKTAQVQSGSSLVVFSLGAVGLGAISGAKMMGATKIIGIDINEKKKKKGEAFGMTHFINPKDYSHKPSSQLVKDLTSGLGVDYSFECAGVASLLNQALESTKVGKGKAIAIGVGTEELVKINWFGLFGRTLKGSIFGGLKPKSDLSFLAAKCKNKDLPLDELQTHEIPLTEISKAFELSKQEGCIKVIIKM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01245 374 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Accr13g01245 374 Pfam Alcohol dehydrogenase GroES-like domain 36 160 IPR013154 -
Accr13g01245 374 CDD liver_alcohol_DH_like 8 373 - -
Accr13g01245 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Accr13g01245 374 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
Accr13g01245 374 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Accr13g01245 374 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Accr13g01245 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 336 IPR036291 -
Accr13g01245 374 PANTHER ALCOHOL DEHYDROGENASE 6 365 - -
Accr13g01245 374 Gene3D - 14 369 - -
Accr13g01245 374 Gene3D - 179 317 - -
Accr13g01245 374 SUPERFAMILY GroES-like 4 188 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01245 Accr-Chr13 16834907 16869543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01245 36 174 Monolignol Biosynthesis Gene Families AT4G37970 30.986 5.49e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01245 K00121 - gmx:100798341 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g01245 13 16834907 16869543 Accr13g01245 13 16834907 16869543 ECH