Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01240 ATGGCTGCGGTTGCTGAGATTTCCGTGGATGCAGCAGCAGCAGCAGCTGCGAACCGTTTGGACTCAAATTGCAAGTCGGAATCCGAATTCAATGTGCAAAAGCTCGTCGATATGTTCACTAAGTTGAATCCTTTGGCGAAAGAGTTTATCCCTTCAAGATATTCTCACCATGATCACTTCCATCAGGGCGATCATCAGCTCCCTCCGAACAATTTTCTGGTCGGAAATAATATGGCAGCTGATGGTCACCAAAATAATCGAAGGAGAAGAACTAATTATACCCAGGGGAGGAGAAGGTCAAATGGAAGAGTGCATAAGGCTCAGAGAGAAGATAGCATTAGAAGAACCGTATATGTTTCCGATATAGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTTACTAGTTGTGGACAAGTTATTGACTGCCGAATTTGTGGTGATCCACATTCAATTCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAGTATGGTGCAAGAGCAGCTTTAAACCTTGGTGGTACTGTGCTTGGGTACTATCCAGTTAGGGTCCTTCCTTCAAAAACTGCCATCCTTCCTGTGAATCCCACATTCCTCCCTAGGTCTGAGGATGAACGGGAAATGTGTAGCAGGACTGTGTACTGTACAAATATTGACAAAAAGATTTCCCAAGCTGACGTGAAAAACTTCTTTGAAACTGCTTGTGGTGGTGAGGTTACCCGCTTGAGGCTTTTAGGAGATCATGCTCATTCAACTCGAATTGCTTTTGTAGAATTTGCAATGGCTGAAAGTGCCATTATGGCACTAAATTGTAGTGGGATGCCCTTGGGAAGCCAGCCTATCAGGGTAAGTCCTTCGAAGACACCTGTGAGGCCAAGAATGCCCCATCCAACACCTCATTAA 906 0.4481 MAAVAEISVDAAAAAAANRLDSNCKSESEFNVQKLVDMFTKLNPLAKEFIPSRYSHHDHFHQGDHQLPPNNFLVGNNMAADGHQNNRRRRTNYTQGRRRSNGRVHKAQREDSIRRTVYVSDIDQHVTEERLAALFTSCGQVIDCRICGDPHSILRFAFVEFADEYGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKISQADVKNFFETACGGEVTRLRLLGDHAHSTRIAFVEFAMAESAIMALNCSGMPLGSQPIRVSPSKTPVRPRMPHPTPH 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01240 301 CDD RRM1_CID8_like 113 192 IPR034823 -
Accr13g01240 301 FunFam Polyadenylate-binding protein-interacting protein 10 206 285 - -
Accr13g01240 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 179 IPR000504 GO:0003723
Accr13g01240 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Accr13g01240 301 SMART rrm1_1 213 285 IPR000504 GO:0003723
Accr13g01240 301 SMART rrm1_1 116 186 IPR000504 GO:0003723
Accr13g01240 301 SUPERFAMILY RNA-binding domain, RBD 84 191 IPR035979 GO:0003676
Accr13g01240 301 Gene3D - 75 191 IPR012677 -
Accr13g01240 301 Gene3D - 200 294 IPR012677 -
Accr13g01240 301 Pfam Ataxin-2 C-terminal region 38 52 IPR009818 -
Accr13g01240 301 MobiDBLite consensus disorder prediction 77 109 - -
Accr13g01240 301 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 38 294 - -
Accr13g01240 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 190 IPR000504 GO:0003723
Accr13g01240 301 FunFam Polyadenylate-binding protein-interacting protein 11 80 192 - -
Accr13g01240 301 MobiDBLite consensus disorder prediction 281 301 - -
Accr13g01240 301 CDD RRM2_CID8_like 208 290 IPR034825 -
Accr13g01240 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Accr13g01240 301 SUPERFAMILY RNA-binding domain, RBD 202 295 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01240 Accr-Chr13 16751450 16757596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01240 112 270 Eukaryotic Initiation Factors Gene Family AT1G34140 25.926 3.50e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01240 - - cave:132175143 458.373