Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01238 ATGGCATCCCAAAACGAAGGGCATGAAGCAGCAATAAGAAGATTGCTTGAAGCTCAAACCCATGGATGGAACCACATCTTCAGCTTCATTAACTCAATGTCTTTGAGGTCAGCAATAGAGTTAAACATACCAGACATCATTCACAAGCATGGCAAGCCCATGCCTCTTCATCTTCTCGCCTCTTCCCTTCAAATCCAACCTTCCAAAGCCCCTCACCTCCGTCGCTTGATGCGCTTCCTCACTCATACCGGCTTCTTCTCTCTCCAGAAGCTTCCAGAAACTTCTGATGACCCTGAAGGCTACGTCCTCACCGATACATCGACCCTTTTTCTCAAGGACCATCCCTTCACTTTGGCCCCTCTTTCACATTGCTCGCTTGACCCCCTCTTGGTGAAATCATGGGAACATTTGCCGGCTTGGTTTCAGAACAATGATCCGACGCCGTTTGAAACGGCGTATGGAAAGCCTTTCTATGATTATGCCTGGCATGTGCCTAGAATTTTCAATAACATCAACGACTACATGGCTGGCGATTCAAAACTAGTTGCAAAAGTGTTGGTTGAGCAGTGTAGGGATGTATTTAAGGGATGTGGCTCGCTTGTTGATGTTGGGGGTAACACTGGCACCATGGCCAAGGCCTTAGCTGAAGCTTTTCCAGAAATGGAGTGTACTGTGTTCGATTTGCCTTACGTTGTTGGCGACTTGAAGGACTGTGGGAACCTCAAGTTCGTCCAAGGAGATATGTTTCAGACTATTCCTCCTCCTGCTGATATTATCATGTTGAAGTGGGTTCTATGTGACTGGGACGACGAGACATGTCTGAAATTACTGAAGAACTTAAAGGAGGCAGTAACAAGCAAAGGCAAGCGAGGGAAGTTGGTTATAATAGAGGAAGTGGTTGAGCATGACAAGGCAGATTATGATGATGAATCGGTTGAAACATTGTTGCAATTTGATGTGGCAACAATGGTACAGGTCCCAGGAAAAGAGAGAAATGAGAAAGAGTGGGCCCACTTGTTTTCCTCGGCAGGTTTCACTACCTATAAGATAACTCCGAATCTAGGTATAAGGTCTCTCATTGAGGTTTTCCCATGA 1095 0.4594 MASQNEGHEAAIRRLLEAQTHGWNHIFSFINSMSLRSAIELNIPDIIHKHGKPMPLHLLASSLQIQPSKAPHLRRLMRFLTHTGFFSLQKLPETSDDPEGYVLTDTSTLFLKDHPFTLAPLSHCSLDPLLVKSWEHLPAWFQNNDPTPFETAYGKPFYDYAWHVPRIFNNINDYMAGDSKLVAKVLVEQCRDVFKGCGSLVDVGGNTGTMAKALAEAFPEMECTVFDLPYVVGDLKDCGNLKFVQGDMFQTIPPPADIIMLKWVLCDWDDETCLKLLKNLKEAVTSKGKRGKLVIIEEVVEHDKADYDDESVETLLQFDVATMVQVPGKERNEKEWAHLFSSAGFTTYKITPNLGIRSLIEVFP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01238 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 364 IPR016461 GO:0008168
Accr13g01238 364 Pfam Dimerisation domain 33 81 IPR012967 GO:0046983
Accr13g01238 364 SUPERFAMILY "Winged helix" DNA-binding domain 14 115 IPR036390 -
Accr13g01238 364 Gene3D Vaccinia Virus protein VP39 111 364 IPR029063 -
Accr13g01238 364 PANTHER O-METHYLTRANSFERASE 27 348 IPR016461 GO:0008168
Accr13g01238 364 Gene3D - 3 110 IPR036388 -
Accr13g01238 364 PIRSF O-mtase 1 364 IPR016461 GO:0008168
Accr13g01238 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 362 IPR029063 -
Accr13g01238 364 FunFam Coniferyl alcohol 9-O-methyltransferase 5 110 - -
Accr13g01238 364 Pfam O-methyltransferase domain 134 345 IPR001077 GO:0008171
Accr13g01238 364 FunFam O-methyltransferase ZRP4 112 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01238 Accr-Chr13 16528586 16531420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01238 33 363 Monolignol Biosynthesis Gene Families AT5G54160 32.239 3.92e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01238 - - qsa:O6P43_028865 425.631