Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01189 ATGGATCCCGATTACCATGGCTTACCTCCCCTCAAGAGATTCAGACTCATCCAACAGCAACAAGAGCTCCAGAATCAACAGCCACATCACAATCACAAAACTAACGATGAACGCGCCGGCGATTCCTGCTCAACCTTACCGGCAAAGAAGCGTAAGGAATCTCGAGATTCAATATTTCTTTCTGATTCGCCAGTTTCAGTCTCTGTCAACACTTATTCGTTACCGGCCAAGAAACGGGTATGGGCTCTTCAACCTGATTTTGCTTCCGATGTCGGTGTTTCTTCTATTGACCTCAATGTTGAATACAAACCATCAATTGAGGAAGAAGTAAAATCAGTAAATAATGAACCCAGTAATTCCGAGATTCCACTTGTAGCAAATTCCCTCGATGTTGAAAATGAAAATGAAAATATTGAAGATGTTGACGAGGATGGGATTGTGTGTGCTGTATGTCAAAGCACCGATGGGGATCCGTCAGATCCAATTGTTCTCTGTGATGGGTGTGATCTAATGGTTCATGCCTCATGCTATGGAAATCCGCTTGTAAAAGGAATACCAGTAGGTGATTGGTTCTGTGAAAAATGCAGAGTTTCATCGTCTTCTCAATCTAAGAAAGATGATGAAAACAACATTTCTTGTTGCCTCTGTTCTACAAAGGAAGGGGCTATGAAACCCACTGTAGATGAACGGTGGGCCCATATTGTGTGTGCACTTTTAGTCCCTGAGGTTTTTTTTAAGGACCCAGAAGGAAGAGAAGGGATTGATTGCTCAATGATTCCCAAGAAGAGGTGGTCTGAGAAGTGTTATATTTGTGAATCTTCAAGTGGGTGTGCCATTGTGTGTTCAGAGATTAAGTGTCCTTTAGCATTTCATGTCACTTGTGGGTTGAAAGAGGATCTTAGCATTGAGTATCGTGAAGGGAAGAAGAATGCCACCATCGTTGCTGGTTTCTGCAAAAGCCACACTGAGTTATGGAAAAAGCAACAGCTATCTGGGAAATACAGAATCGTTGCTGAAGAAAACAAGTAG 1029 0.4237 MDPDYHGLPPLKRFRLIQQQQELQNQQPHHNHKTNDERAGDSCSTLPAKKRKESRDSIFLSDSPVSVSVNTYSLPAKKRVWALQPDFASDVGVSSIDLNVEYKPSIEEEVKSVNNEPSNSEIPLVANSLDVENENENIEDVDEDGIVCAVCQSTDGDPSDPIVLCDGCDLMVHASCYGNPLVKGIPVGDWFCEKCRVSSSSQSKKDDENNISCCLCSTKEGAMKPTVDERWAHIVCALLVPEVFFKDPEGREGIDCSMIPKKRWSEKCYICESSSGCAIVCSEIKCPLAFHVTCGLKEDLSIEYREGKKNATIVAGFCKSHTELWKKQQLSGKYRIVAEENK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01189 342 MobiDBLite consensus disorder prediction 29 55 - -
Accr13g01189 342 SUPERFAMILY FYVE/PHD zinc finger 134 199 IPR011011 -
Accr13g01189 342 Pfam PHD-finger 147 197 IPR019787 -
Accr13g01189 342 SMART PHD_3 267 322 IPR001965 -
Accr13g01189 342 SMART PHD_3 147 196 IPR001965 -
Accr13g01189 342 PANTHER PHD FINGER PROTEINS 58 322 - -
Accr13g01189 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 324 IPR013083 -
Accr13g01189 342 ProSiteProfiles Zinc finger PHD-type profile. 145 198 IPR019787 -
Accr13g01189 342 MobiDBLite consensus disorder prediction 1 55 - -
Accr13g01189 342 Pfam PHD-zinc-finger like domain 212 321 - -
Accr13g01189 342 ProSiteProfiles Extended PHD (ePHD) domain profile. 210 322 IPR034732 -
Accr13g01189 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 201 IPR013083 -
Accr13g01189 342 CDD PHD_BRPF_JADE_like 147 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01189 Accr-Chr13 15726736 15728356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01189 46 340 C2H2 Transcription Factor Family AT3G14740 58.599 1.97e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr13g01189 zf-HC5HC2H_2 4.7e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01189 K11380 - qsa:O6P43_001103 437.958