Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01180 ATGTTTACTTTTCTGCGCAGAGCCATCCCTTGTCCGCGGCATATTATCAACGCAATCTCTCCTTCTCCAACATTTCAGCTTCAACTTTGTCTCCAAACCCAGTGGTCTTCTGTGAGGTACGCTTTCTCAAACGCCTCAAACGGGAATTCTTTCACTGTCTCTTATCTCATTGATTCCTGTGGCTTCTCACCCCAAGAAGCTGAAGCAGCCTCTAAGCGTGTCAGCCTTGAAACGCGAGATAAGCCAGATCTGGTTATCGGGTTCCTCAAAAGTCATGGATTCTCACAACCCCAGATTCTTCGTCTTATTAGAATTGTTCCAGAGCTTCTTCGATATGATCCTGAGAAAACCTTTCTGCCCAAGATTGAATTCTTCAAATCCAGAGGCATTTCGAGCTCACACATCCCTAGGCTCATTTGTAGTTCTCCTAACATCATGAGAAGAAGCTTAAGTAAGCATCTCATTCCTTCCTTTAATTTCCTTCGAGATTTGTTTCAATCTGATGAGAAGCTCATTAAATCTCTTCAATATTCCTCAGTCATTCTTCTTGATCCTAAAACCTTTGTAGTGCCTAAAATGGAGCTTCTGCGGGAAGCAGGAGTTCCTCAATCAAACATCATCAAATATTTGCAGTTTTTCTCTAGAACATTGACTTGTAGTCCTGGTCGACTTAAGAAGGCTGTGGAGGAAGTGAAAGAACTTGGTTTTGATCCTTTGAAGTTTCAATTTCTAGTGGCTGTCCATGTATGCATAAGCTTGAAAAAATCCACAAGGGATAAAAAGGCTGATGTATATAAGAAGTGGGGTTGTTCTGACAACGACATTGTTGCAGCATTTAGAAAGTTCCCTGTCTGTATGACACTGGCAGAAGATCAGATTGATGCAAAATTTGAGTTTTTAGTCAATCAATTGGGCTGTAACCCTTCCAATATTATCAAATACGCTAGTGTTTTGGGATATAGTTTGAAAAAACGAATTGTTCCAAGAGCTGCTGTCCTTCAAGTTCTGTTGTCAAAGGGTCTGATGAAAAGTGAAACTTTTCTTGTAAACTTTATGCATACTGAAAAGGACTTTCTAAGGAGGTTTGTCCTTTGTCATGGGCAACAAGTCGCAAATGAGTTATTGGAGTTGTATCGCACAAAACTGGATCAAGCTAGATGA 1161 0.4057 MFTFLRRAIPCPRHIINAISPSPTFQLQLCLQTQWSSVRYAFSNASNGNSFTVSYLIDSCGFSPQEAEAASKRVSLETRDKPDLVIGFLKSHGFSQPQILRLIRIVPELLRYDPEKTFLPKIEFFKSRGISSSHIPRLICSSPNIMRRSLSKHLIPSFNFLRDLFQSDEKLIKSLQYSSVILLDPKTFVVPKMELLREAGVPQSNIIKYLQFFSRTLTCSPGRLKKAVEEVKELGFDPLKFQFLVAVHVCISLKKSTRDKKADVYKKWGCSDNDIVAAFRKFPVCMTLAEDQIDAKFEFLVNQLGCNPSNIIKYASVLGYSLKKRIVPRAAVLQVLLSKGLMKSETFLVNFMHTEKDFLRRFVLCHGQQVANELLELYRTKLDQAR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01180 386 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Accr13g01180 386 SMART mt_12 172 202 IPR003690 GO:0003690|GO:0006355
Accr13g01180 386 SMART mt_12 308 342 IPR003690 GO:0003690|GO:0006355
Accr13g01180 386 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Accr13g01180 386 SMART mt_12 207 237 IPR003690 GO:0003690|GO:0006355
Accr13g01180 386 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Accr13g01180 386 FunFam Mitochondrial transcription termination factor-like 150 370 - -
Accr13g01180 386 Pfam mTERF 87 237 IPR003690 GO:0003690|GO:0006355
Accr13g01180 386 Pfam mTERF 193 348 IPR003690 GO:0003690|GO:0006355
Accr13g01180 386 Gene3D Transcription termination factor 3, mitochondrial 174 370 IPR038538 -
Accr13g01180 386 Gene3D Transcription termination factor 3, mitochondrial 57 173 IPR038538 -
Accr13g01180 386 PANTHER CGI-12 PROTEIN-RELATED 47 366 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01180 Accr-Chr13 15659697 15660857 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Accr13g01180 mTERF 5.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01180 K15031 - qsa:O6P43_003531 339.347