Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01173 ATGCAGAAAAACCATGAATATGATGTGTCTCTTCATGCTCTGTTGCTCGCAGCTGCCCAGCCTTACCCCGCAATCCTAAATGCCGCCATTGAGCTCAACCTCTTTAAGATCATTGGTGAGGGAAGTCCTAAGGGCATGTCACCCTCTGAAATCGCTTCAAAGCTTCCAAATCCACATGATAGCACGGCTCGCCGTCTCGATCGATTGCTATTTTTGCTTGCCAGTCATTCTGTTTTGACTTGTTCTTCTTCCAACAAGGTTGATGGTGATGGCAGAACTGAGAGGCTTTATGCTCTATCTCCTGCCGGTAAATACATGTTCCCCAATGAAGTTGGAGCCTCTTATGCTTCAATCTCAACTTTATACAACCATCCAGCTTATATGAAAGCTCTGGGAAACATCAAACAAGTTATACTGGATGAGGAAGAGGACCTGTTCAAGAAAGTTCATGGGATGTCCATATTTGAATATATGAAAAGAGATCCAACCTTGTAA 495 0.4364 MQKNHEYDVSLHALLLAAAQPYPAILNAAIELNLFKIIGEGSPKGMSPSEIASKLPNPHDSTARRLDRLLFLLASHSVLTCSSSNKVDGDGRTERLYALSPAGKYMFPNEVGASYASISTLYNHPAYMKALGNIKQVILDEEEDLFKKVHGMSIFEYMKRDPTL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01173 164 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 14 164 IPR016461 GO:0008168
Accr13g01173 164 Gene3D - 1 106 IPR036388 -
Accr13g01173 164 SUPERFAMILY "Winged helix" DNA-binding domain 6 109 IPR036390 -
Accr13g01173 164 Pfam Dimerisation domain 25 74 IPR012967 GO:0046983
Accr13g01173 164 FunFam Caffeic acid 3-O-methyltransferase 1 106 - -
Accr13g01173 164 Gene3D Vaccinia Virus protein VP39 108 164 IPR029063 -
Accr13g01173 164 PANTHER O-METHYLTRANSFERASE 16 161 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01173 Accr-Chr13 15482074 15482660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01173 8 162 Monolignol Biosynthesis Gene Families AT5G54160 44.231 1.37e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01173 K13066 - pcin:129289191 164.851