Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01172 ATGGGCAGCAACATGGAGAATAATCATGATGAATATGACGTTTCTCTTCATGCTCTGTTGCTGGCAAGTGCCCAGCTTTACCCCGCAGTCCTAAATGCCGCCATTGAGCTCAACCTCTTTAAGATCATTGGTGAGGGAAGTCCTAAGGGCATGTCACCCACTGAAATTGCTTCAAAGCTTCCAAATCCACGTGATAACATGGCTGGCCGCCTCGATCGATTGCTATTTTTGCTTGCTAGTCATTCTGTTTTGACTTGTTCTTCTTCCAACAAGGTTGATGATGATGGTAGAACTGAGAGGCTTTATGCTCTATCTCCTGCCGGTAAATACATGTTCCCCAATGAAGTTGAAGCCTCTTATGCTTCAGTCTCAAACTTATGTAACCATCCAGCTTATGTAAAAGTTCTGGGAAACATCAAACAAATTATACTGGACGAGGAAGAGGACCTGTTCAAGAAAGTTCATGGGATGTCCATGTATGAATATATGAAAAGAAATCCAACCATGGAAACTCTTTTCCACAAGGCAGCGTCTGATTTTTCATTCATGCACATGACGCAGATCCTTGAGAAATATAAAGGATTTGAAGGAATATCAACACTTGTTGATGTTGCTGGTGGCATTGGCCAATGCCTCAAAATGATCGTCTCCAAGTACCCTTCAATTCAAGGCATTAACTTTGATCTGCCACATGTTGTTCAAAGAGCCCCATCCCACCCACGAGTCAAATATGTTGGAGGAGACATGTTCCAAAGTGTGCCAGAAGGTGATGCTATAATGATGAAGGCTACAACTCATAACTGGGCAGATGACAAATGCATACAAGTTCTGAAAAATTGTCATAATTCCCTCAAGAAAGGTGGGAAGCTTATTATTATTGACCTAATAATGCCTGAAATGCCAAATGAGACCGATAGCCATAAACATGCTGCGATTGCTGACAACTACATGTTTCTGCTTGCTGGTGGGAAGGAAAGAACTGAGAAAGAATTCGAAGCACTCGGCAAAGCTGCTGGGTTTTCTATCTATCGTGTTGCTGCTCGTCTCTTCTCATCTTCGTTGGGAGTCATTGAGTTTTATAAATAA 1086 0.4217 MGSNMENNHDEYDVSLHALLLASAQLYPAVLNAAIELNLFKIIGEGSPKGMSPTEIASKLPNPRDNMAGRLDRLLFLLASHSVLTCSSSNKVDDDGRTERLYALSPAGKYMFPNEVEASYASVSNLCNHPAYVKVLGNIKQIILDEEEDLFKKVHGMSMYEYMKRNPTMETLFHKAASDFSFMHMTQILEKYKGFEGISTLVDVAGGIGQCLKMIVSKYPSIQGINFDLPHVVQRAPSHPRVKYVGGDMFQSVPEGDAIMMKATTHNWADDKCIQVLKNCHNSLKKGGKLIIIDLIMPEMPNETDSHKHAAIADNYMFLLAGGKERTEKEFEALGKAAGFSIYRVAARLFSSSLGVIEFYK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01172 361 PANTHER O-METHYLTRANSFERASE 21 351 IPR016461 GO:0008168
Accr13g01172 361 CDD AdoMet_MTases 200 297 - -
Accr13g01172 361 Gene3D Vaccinia Virus protein VP39 113 361 IPR029063 -
Accr13g01172 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 361 IPR016461 GO:0008168
Accr13g01172 361 SUPERFAMILY "Winged helix" DNA-binding domain 11 114 IPR036390 -
Accr13g01172 361 FunFam Caffeic acid 3-O-methyltransferase 2 111 - -
Accr13g01172 361 Pfam O-methyltransferase domain 140 341 IPR001077 GO:0008171
Accr13g01172 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
Accr13g01172 361 Gene3D - 2 111 IPR036388 -
Accr13g01172 361 Pfam Dimerisation domain 30 79 IPR012967 GO:0046983
Accr13g01172 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 347 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01172 Accr-Chr13 15418409 15420149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01172 1 361 Monolignol Biosynthesis Gene Families AT5G54160 47.283 5.50e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01172 - - qsu:112031144 374.015