Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01164 ATGAAGATTCAGTGCAACGTGTGTGAGGCGGCGGAGGCGGAAGTTCTGTGCTGTGCGGATGAGGCGGCGCTATGTCGGAAATGCGACGAGAAGGTTCATGCAGCTAACAAACTCGCTACCAAGCATCAGAGGGTTCCTCTATCTACCTCTTCCTCTCACATGCCCATATGTGATATTTGTCAGGAAGCAGTTGGCTATTTCTTCTGTCTGGAGGACCGAGCCTTACTATGCAGAAAATGCGATGTGGCAATACACACAGCAAACTCCTATGTCTCTGCTCATCAGAGGTTTCTGCTTACTGGTGTAAGAGTGGGTCTTGAAGCTACTGAGCCTGTTGTTCCATCGTCCTCTGTGAAGCCAGATTCTGGGGGGAAAGTGTCAGATACAGTATCTACTTCTGTCTCCAAGAATGGTTCTTCAATGCCTCAGCCATCTGAATACAATGAAGTTTTACCTACTCAAATTGGAGGAATTGAGGAGTTTCAACCAACCAAAGTGTCTTATGGTGGTGGTTTTACTAACTGGCCGCTTGATGAATATTTTGGTTTCAATGAATTCAATCAGAATTTGAATTTCATGGACAATTCCAACGGACCATCGAAGGCTGATAGCAGTAAGCTTGGGGATTCTGATTCTTCGGTTCTAAGATCTAGTGAAGAGGAAATGGATAATGAGGATCACTTGGGATGTGTTCCGGATTCGTCTTGGACAGTTCCTCAGATCCCTTCCCCTCCAACGGCTTCAGGCTTATATTGGCCAAAAGATCCTCGTTATTCATCTGCTAATAATGTTATCTTTGTTCCTGACATATGCTCTCCTCACATCCATCAGCCTCTTCATGCTCAAAGAACCGGTACATTATCAAAGCGGCAAAGGAGACAGTAA 885 0.4531 MKIQCNVCEAAEAEVLCCADEAALCRKCDEKVHAANKLATKHQRVPLSTSSSHMPICDICQEAVGYFFCLEDRALLCRKCDVAIHTANSYVSAHQRFLLTGVRVGLEATEPVVPSSSVKPDSGGKVSDTVSTSVSKNGSSMPQPSEYNEVLPTQIGGIEEFQPTKVSYGGGFTNWPLDEYFGFNEFNQNLNFMDNSNGPSKADSSKLGDSDSSVLRSSEEEMDNEDHLGCVPDSSWTVPQIPSPPTASGLYWPKDPRYSSANNVIFVPDICSPHIHQPLHAQRTGTLSKRQRRQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01164 294 CDD Bbox1_BBX-like 5 47 - -
Accr13g01164 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 - -
Accr13g01164 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Accr13g01164 294 MobiDBLite consensus disorder prediction 112 147 - -
Accr13g01164 294 SUPERFAMILY B-box zinc-binding domain 45 94 - -
Accr13g01164 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Accr13g01164 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Accr13g01164 294 Pfam B-box zinc finger 54 94 IPR000315 GO:0008270
Accr13g01164 294 Gene3D Classic Zinc Finger 1 93 - -
Accr13g01164 294 MobiDBLite consensus disorder prediction 120 147 - -
Accr13g01164 294 MobiDBLite consensus disorder prediction 213 228 - -
Accr13g01164 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Accr13g01164 294 CDD Bbox1_BBX-like 56 99 - -
Accr13g01164 294 MobiDBLite consensus disorder prediction 194 212 - -
Accr13g01164 294 FunFam B-box zinc finger protein 22 1 93 - -
Accr13g01164 294 MobiDBLite consensus disorder prediction 194 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01164 Accr-Chr13 15304822 15307257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01164 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 47.748 2.86e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr13g01164 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01164 - - gmx:100808889 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g01164 13 15304822 15307257 Accr13g01164 13 15304822 15307257 ECH