Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01142 ATGAGAAGAGGTGGATACCGATATGGTGCCGGCGGCTACAGGGGAGAGCCAAGTGGCAGGAATGACGGCAGATCAGGTGGAGGACCACCGCGACGCGGTGGTGGAAGAGGCTACCATCACCCACCGCAGCCTCACAATGATCCTTCTTGGGGCGAGGACACGAGGAGAGGGAGATCCAGAGATGGTGCTGGACCTGTTAGGGTAGCCAGTGAATCGGTTCATTCTCGTGATTCTCCTCCTCATCCAGTTCCTAAACGACGCCAAATTTCACAACCGCTTCCAAACATATGTCATAATCCGGAGACAAAAGATAAGCTTTTACCAGTACATAGGCCTGACAGGGGTGGCACATTAGCAGCTCGAACTTGCAAGCTTCGTGTCAATCACTTTCCCCTCACATTCAGGCCTGATACTATACTGATGCATTACAATGTTGACGTGAAGCTCACTTCGCCTATCAGACATGGTGGATCTCAAAAAATATCAAAGTCTGACCTCTCTACAATTAGGGAGACGTTGTTTTCTAGTGACACTAGGTTGCCATTGGAGAAAACAGTCTATGACGGAGAAAAGAATATCATCAGTGCAGTTCCTTTGCCAGAAGAAACCTTCACGGTTACTATCTCAGCCGGAGAGGATGAAAGAAGCTATTCATATATGGTCACCTTAACACTCGTTAACAAGCTTGAGTATCGCAAGTTGAGGCAATACCTCAATAGGGAGCTTATGTCAGTTCCAAGAGACATTTTGCAAGGGATGGATATAGTGTTGAAGGAAAATCCAGCCAAGCGTACGATCTCTTTGGGACATGGCTTTTATCCTTCGTATCGTCCTATGTTCCATCAGGATTTTCGCAATGGTGTAATTGCATTGGGAGGATTTCACCACAGTTTGAAGCCTACATCTCAGGGATTGTCCTTATGTCTTGACTACTCAGTTGTATCGTTTCGAAAGCCAATCTCAGTCTTGGATTTCCTATTTGAGCGCATTGATGGCTTTAGATTGGAAGAATTCGGGCATTTCAGGCATCGCGTTAAGACAGAATTGATTGGGTTAAAGGTAAATGTGACACATCGCAGAACCAAACAGAAATTCACCATTGTAAGGTTATCAAACCATAACACAAGGGATATCACCTTTACTTTTGTTGATCGGGAGGGCGGTTGTGACCCATATGAAGTCAACATTGTTGACTATTTTTGGGATAAATACCAAAAGAATATTGTACACAAAGATATTCCTTGTTTAGAATTTGGGAGAGGTGTCAATGTGCCAATGGAGTTTTGCATCTTAGTTGAGGGTCAGAGATATCCCAAAGAGAATTTGAATAAAAATGCTTCCATGGCTTTGAAAAATATGTCATTGCCCCCTCCAAAGGTGAGACAGAGTGCCATACAAGCAATGGTGGAGTCAAGTGACGGACCTTGCGGTGGTGGTATTATTCAAAATTTTGGGATACAAGTCAACACAACCATGACTAGTGTTTTAGGACGCATTATTGAGCCACCAAGATTGAAAGTAGGTGGTCGACATGGCGAGATTATGACAGTAACATTGGATCCACAGAAATGCCATTGGAATCTGGTTGGAAAATCTGTGATGAAAGGCAAACCAATTGAGCATTGGGGCATTATTGATTTTACAAGCTCAGAGTCAGATTTCCGGTTCAAATTAAGATGCAAGGAGTTCATTTACAAGCTGAAGGACAAATTTAGAAGTTTGGGCATTTACATGAACGATCCTCTTGGGGTTGAACGATCTTCAATGCATCAACTTTCAAGTCATGGCTCACTGTCTGCATTACTTAAGAAAGTGAATGATTGGGATCGAGTGCAATTTATTCTGTGTGTGATGTCTCAAAAACATGTTGGGTATAAGACGCTTAAGTGGATTGCAGAGACAAAGGTTGGTGTAGTGACACAATGTTGTTTAGCTGGTACTGTGAATACAGGGAAAGATCAGAATTTTACAAATCTTGCTCTCAAGATTAATGCCAAACTTGGAGGTAGTAACGTTGAGCTTGAGAATAATAGGCTTCCTTACTTTGCAAGTGATAGGCACGTCATGTTTATAGGGGCAGATGTCAATCATCCTGCTGCTCAGGACGTTAATAGTCTATCAATTGCTGCGGTGGTTGGAACTGTCAATTGGCCTGCTGCAAATCGGTACGCGGCACGTGTTGGTCCTCAATCCCATAGGAAAGAACAAATAATGAATTTTGGAACAATTTGCCTTGAGCTTGTGGACTGTTACAGAAGGTTGAACAAAGTGAAACCAGAAAAAATAGTTATTTTTCGTGATGGGGTGAGTGAAGGCCAGTTTGACATGGTTCTTAATGAAGAGCTACGAGATGTGAAGAGTGTCTTCCAAAAGCAAAACTATTTTCCAACCATAACTTTGATTGTAGCACAGAAGCGACATCAGACTCGGTTGTTTCATGAGCAGGCTTCGGCTGGTAATGTGTCTCCAGGAACGGTGGTGGACACAAAAGTGGTACATCCTTTTGAGTTTGACTTCTACCTTTGCAGTCACTATGGAAGCTTAGGGACAAGCAAGCCAACTCATTATCATGTATTGTGGGATGAGCACAGGTTTACCTCTGATGAGTTACAGAAACTTATATATGATATGTGTTTTACCTTTGTGAGGTGCACTAAACCTGTATCTTTGGTCCCTCCTGTGTATTATGCCGACCTTGTTGCCTATCGAGGACGACTATACTATGAAGCAAAGACTGAGTTGGATCCTTCATCTGCAAATGAACACAAGTATTTCAAGCTACATGAACACCTGGAAGACATGATGTTCTTTGTGTAA 2817 0.4288 MRRGGYRYGAGGYRGEPSGRNDGRSGGGPPRRGGGRGYHHPPQPHNDPSWGEDTRRGRSRDGAGPVRVASESVHSRDSPPHPVPKRRQISQPLPNICHNPETKDKLLPVHRPDRGGTLAARTCKLRVNHFPLTFRPDTILMHYNVDVKLTSPIRHGGSQKISKSDLSTIRETLFSSDTRLPLEKTVYDGEKNIISAVPLPEETFTVTISAGEDERSYSYMVTLTLVNKLEYRKLRQYLNRELMSVPRDILQGMDIVLKENPAKRTISLGHGFYPSYRPMFHQDFRNGVIALGGFHHSLKPTSQGLSLCLDYSVVSFRKPISVLDFLFERIDGFRLEEFGHFRHRVKTELIGLKVNVTHRRTKQKFTIVRLSNHNTRDITFTFVDREGGCDPYEVNIVDYFWDKYQKNIVHKDIPCLEFGRGVNVPMEFCILVEGQRYPKENLNKNASMALKNMSLPPPKVRQSAIQAMVESSDGPCGGGIIQNFGIQVNTTMTSVLGRIIEPPRLKVGGRHGEIMTVTLDPQKCHWNLVGKSVMKGKPIEHWGIIDFTSSESDFRFKLRCKEFIYKLKDKFRSLGIYMNDPLGVERSSMHQLSSHGSLSALLKKVNDWDRVQFILCVMSQKHVGYKTLKWIAETKVGVVTQCCLAGTVNTGKDQNFTNLALKINAKLGGSNVELENNRLPYFASDRHVMFIGADVNHPAAQDVNSLSIAAVVGTVNWPAANRYAARVGPQSHRKEQIMNFGTICLELVDCYRRLNKVKPEKIVIFRDGVSEGQFDMVLNEELRDVKSVFQKQNYFPTITLIVAQKRHQTRLFHEQASAGNVSPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHRFTSDELQKLIYDMCFTFVRCTKPVSLVPPVYYADLVAYRGRLYYEAKTELDPSSANEHKYFKLHEHLEDMMFFV 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01142 938 Gene3D paz domain 314 437 - -
Accr13g01142 938 Pfam Argonaute linker 1 domain 270 318 IPR014811 -
Accr13g01142 938 ProSiteProfiles Piwi domain profile. 613 909 IPR003165 GO:0003676
Accr13g01142 938 Pfam N-terminal domain of argonaute 121 257 IPR032474 -
Accr13g01142 938 MobiDBLite consensus disorder prediction 1 110 - -
Accr13g01142 938 SUPERFAMILY Ribonuclease H-like 609 909 IPR012337 -
Accr13g01142 938 Gene3D - 499 676 - -
Accr13g01142 938 SMART DUF1785_2 266 319 IPR014811 -
Accr13g01142 938 SUPERFAMILY PAZ domain 316 470 IPR036085 GO:0005515
Accr13g01142 938 ProSiteProfiles PAZ domain profile. 344 433 IPR003100 GO:0005515
Accr13g01142 938 CDD Piwi_ago-like 480 908 IPR045246 -
Accr13g01142 938 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 120 912 - -
Accr13g01142 938 SMART Piwi_a_2 613 909 IPR003165 GO:0003676
Accr13g01142 938 CDD PAZ_argonaute_like 319 432 - -
Accr13g01142 938 Pfam PAZ domain 340 445 IPR003100 GO:0005515
Accr13g01142 938 Pfam Piwi domain 614 908 IPR003165 GO:0003676
Accr13g01142 938 Gene3D - 681 938 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01142 Accr-Chr13 14269477 14274084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01142 88 920 Eukaryotic Initiation Factors Gene Family AT1G48410 35.135 2.14e-141 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01142 K11593 - gmx:100805250 1078.54