Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01123 ATGACTCTGAGAAGCATTTTTTGTTCTCGGAAATTCTGTAGATCCTTGAAGGAGGTCAGGGTCGTCGAGGAAGATGAGCGGAAGGGGCGGATTGTTGGTGTTTCCGACGACGTTGGTGACTCCACGGACTCTCCGCCTTACGGCCATTCATGGGCCACTATGCTGCCGGACCTTCTAGGGGAGATCATTCGCCGTGTTGAAACCACCGAGGACCAGTGGCCTAACCGCCAAAACGTCGTTGCTTGTGCCTGCGTGTGCAAGAGGTGGAGGGATATCACTAAGGAGATCGTGCAGTTCCCTTCTCTCAACAACGACAGGATTACTTTTCCTTCTTGCCTTAAGCAGCCAGGACCTCGTGACTCACCCCACCAATGTATTATAAAGAGGGATAAGAAGACTTTGACATTTCGCCTTTATCTTGCCCTTACTCCACCATCATTCACAGATAGAGGTAAATTTCTCTTGGCAGCTAAGAGATATAGGCGTGGTTCTGGTATTGAATATGTACTTTCACTTGATGCGGATGACATATCGCAAGGAAGTAATGCCTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACGAACTTCACAATGTATGATAGCCAGCCACCCCATTGTGGTGCAAGGCCTTCAAATGGCAAGGCCAGCCGTCGTTTTGCCTGCAAGCAAATATGTCCTCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCATGTATCATACAAGTTCAACCTTTTGAAGTCAAGAGGGCCAAGGAGGATGGTTTGCTTACTTAAGCTCCCAAGCCAATCATCAGGAGAAAGTTCAGATAGCAGATCTCTGGATGTTCACAAGACAAACCATACAGAACAAGCTGCCTCAGAATACTCAATCTTGAAAAACAAATCTCCAAGGTGGCACGAGCAGTTGCAATGCTGGTGCTTAAATTTCCACGGTCGTGTGACTGTAGCATCGGTGAAGAACTTTCAGCTTGTTGCTACGGTGGACCAAAGCCAACCAGGAGGGAAAGGAGACGAGGAAACGGTTCTTCTTCAATTTGGGAAAGTAGGGGATGATACTTTCACTATGGACTACAGGAAGCCCCTATCTGCATTTCAGGCCTTTGCCATATGCCTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1149 0.4743 MTLRSIFCSRKFCRSLKEVRVVEEDERKGRIVGVSDDVGDSTDSPPYGHSWATMLPDLLGEIIRRVETTEDQWPNRQNVVACACVCKRWRDITKEIVQFPSLNNDRITFPSCLKQPGPRDSPHQCIIKRDKKTLTFRLYLALTPPSFTDRGKFLLAAKRYRRGSGIEYVLSLDADDISQGSNAYVGKLSSDFLGTNFTMYDSQPPHCGARPSNGKASRRFACKQICPQVPAGNFEVGHVSYKFNLLKSRGPRRMVCLLKLPSQSSGESSDSRSLDVHKTNHTEQAASEYSILKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRKPLSAFQAFAICLTSFGTKLACE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01123 382 SUPERFAMILY Tubby C-terminal domain-like 105 382 IPR025659 -
Accr13g01123 382 Gene3D Tubby Protein; Chain A 106 382 IPR025659 -
Accr13g01123 382 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Accr13g01123 382 PRINTS Tubby superfamily signature 339 358 IPR000007 -
Accr13g01123 382 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Accr13g01123 382 PRINTS Tubby superfamily signature 292 309 IPR000007 -
Accr13g01123 382 PRINTS Tubby superfamily signature 360 382 IPR000007 -
Accr13g01123 382 PRINTS Tubby superfamily signature 310 326 IPR000007 -
Accr13g01123 382 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Accr13g01123 382 Pfam Tub family 113 377 IPR000007 -
Accr13g01123 382 MobiDBLite consensus disorder prediction 262 281 - -
Accr13g01123 382 ProSitePatterns Tub family signature 2. 367 382 IPR018066 -
Accr13g01123 382 CDD F-box_AtTLP-like 51 95 - -
Accr13g01123 382 PANTHER TUBBY-RELATED 49 380 - -
Accr13g01123 382 Pfam F-box domain 56 98 IPR001810 GO:0005515
Accr13g01123 382 ProSitePatterns Tub family signature 1. 310 323 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01123 Accr-Chr13 13925732 13929432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01123 50 382 TUB Transcription Factor Family AT1G53320 76.106 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr13g01123 Tub 2.6e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01123 K19600 - qsa:O6P43_029189 584.719