Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01105 ATGGGAAGGAGAAATGGAGGAAGGCCACTGCATGAAATTCTTCGTCGTCGCCTTGAGTCCTGTAAATCCAGGTACTCAACTGTTGATGAAATTGTAAACCATCTTCGCGCAAATTACCCTGATTACCAGCGAACAAAACAGCAAACTTTGACTCGATTTGTTCAAGAAGCTTTGGAGTCATCTAAGCGTGGGAACCAGCAATTCAACAGAAAGCCCAATACTCCCATATTGAAGCCTAACGGTTCAGAAGATGATGATGAAGAAGAAGAAGAAGTTCGAAGTGCATCTCGAAAGAGGCGCAAGAAAGTTGATGAAAGTGAAGAGAGATTGCAAAAAATGGAGAGTTTACGCCTTCAAAAGTTACAAAGGGATCGGAGCCGCCGTTTATCAACCTCTTCTCCCTCAACTTCTAGTCCGTCATCAGAGTCTGAAGAGAGTGATGGCGAAGATGGGACCGTGTCCACATCAGAGGATGCAATTTATGAGGAGAAAGTGGAACCAGCCTTTGACTTGACGAAAACAATGTTACGGGCTTCATACTCAGGAACAAAGAATGTGAAATCTACAGCAGAGGAGAAAAACGTTGAAGTAGAGGTGACTAATAAAAATAAGGCAACTAAGATTGGTGCTATGGATGGGGTTGGAGGTAACATGAAAGATGATTTGGAACCAAAAAGGCAATTGACAGGTTCAGTTTCAAATGGCAATGGTGATGTTGAGGTCAAGAGGAAGGGTGGCCCTAGATTCAAAGATTTGGGTGGGATGGAGAAGGTGGTGGAGGAATTGAAGATGGAAGTAATTGTTCCTCTTTATCATCCACAGTTGCCAATAAAATTAGGGGTGAGACCAATGACAGGGATTTTGTTACATGGACCCCCAGGGTGTGGGAAAACCACCCTGGCTCTTGCTATAGCTAATGAGATTGGTTTTCCTTTCTATCAGATATCAGCTACAGAAGTGGTTTCCGGAGTTTCAGGAGCATCTGAAGAAAGCATTAGGGAGCTTTTTTCTAAAGCATACAGGACTGCCCCATCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAACGTGAGATGGAGAAACGAATTGTGACACAATTGCTTACCTCAATGGATCAATCGACTATGCTCTTACAACCAGATGGTAGTTCAGAAAGTTCTGATACTCATCCTGGCTATATTCTTGTTATCGGAGCTACAAATAGGCCTGATGCTGTTGACCCTGCCTTGAGAAGGCCCGGACGATTTGACCGTGAAATTTTTCTTGGTGTTCCTAATGAATATGCTAGGGAGGAGATCTTGTCTGTTATTACTCGCAATCTGACTGTGGAGGGTTCATTTGATCTTAGAAAAATAGCTAGGTCTACACCAGGTTTTGTTGGAGCAGATTTGGCAGCTCTTGTTGACAAGGCTGGTAACCTAGCAATGAAAAGAATTCTTCATGAAAGGAAACGTGAATTATCACAAGATCTTCTAGATGAGCATGGTGAAGGTTGGTGGAGGGAACCTTGGTTACCAGAAGAGATGGATAAGCTTGTCATCAAAATGTCAGATTTTGAGGAAGCAGTCAAATTGGTTCAACCTTCATCAAGAAGAGAAGGGTTTTCTTCCATTCCTAATGTAAAATGGGAAGATATTGGTGGGCTTGATCTTATAAGACAAGAGTTTGAGCGTTATATTGTTAGACGCATAAAATATCCAGACGATTATAAGGAATTTGGGGTGGATCTTGAGACGGGATTTTTGCTCTATGGACCACCAGGGTGTGGTAAAACACTGATTGCCAAAGCCGTTGCCAATGAGGCAGGAGCTAATTTTATTCATATCCAGGGCCCTGAACTTCTAAATAAATATGTTGGAGAAAGCGAGCTAGCAGTACGGACACTGTTTAGTCGTGCAAGAACATGTTCACCTTGTATTCTCTTTTTTGATGAGGTGGATGCACTGACAACCAAACGTGGTAAAGAAGGGGGATGGATTGTTGAGAGACTGTTGAACCAGTTACTTGTTGAGTTAGACGGTGCAGATCAAAGGCAAGGTGTTTTTGTTATTGGGGCTACTAACAGACCTGAGGTGATGGACCGTGCGGTCCTTCGGCCTGGTAGGTTAGGTAAACTTCTGTATGTTCCTCTGCCAAGCTCAAATGAGCGAGGTTTGATCTTAAAAGCTCTTGCAAGAAAGAAGCCAATTGATGTCAACGTGGATTTGTGTGCCATTGGAAGAATGGAAGCTTGTGAAAATCTCAGCGGTGCTGATCTTGCTGCATTGATGAACGAAGCAGCGCTGGCTGCGGCTGAAGAGAAGTCGGCATCAACAGAGAGAACTTCGGATGCATTGACCATCAAGTTGAGCCATTTTGAGACTGCTCTCACTAAAATCTCCCCCTCGGTGACAGACGCGCAAAAACAATACTATCAGCGATTGGCAGAGACTTTTAAGGCTGCATGA 2469 0.4322 MGRRNGGRPLHEILRRRLESCKSRYSTVDEIVNHLRANYPDYQRTKQQTLTRFVQEALESSKRGNQQFNRKPNTPILKPNGSEDDDEEEEEVRSASRKRRKKVDESEERLQKMESLRLQKLQRDRSRRLSTSSPSTSSPSSESEESDGEDGTVSTSEDAIYEEKVEPAFDLTKTMLRASYSGTKNVKSTAEEKNVEVEVTNKNKATKIGAMDGVGGNMKDDLEPKRQLTGSVSNGNGDVEVKRKGGPRFKDLGGMEKVVEELKMEVIVPLYHPQLPIKLGVRPMTGILLHGPPGCGKTTLALAIANEIGFPFYQISATEVVSGVSGASEESIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLLTSMDQSTMLLQPDGSSESSDTHPGYILVIGATNRPDAVDPALRRPGRFDREIFLGVPNEYAREEILSVITRNLTVEGSFDLRKIARSTPGFVGADLAALVDKAGNLAMKRILHERKRELSQDLLDEHGEGWWREPWLPEEMDKLVIKMSDFEEAVKLVQPSSRREGFSSIPNVKWEDIGGLDLIRQEFERYIVRRIKYPDDYKEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIQGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWIVERLLNQLLVELDGADQRQGVFVIGATNRPEVMDRAVLRPGRLGKLLYVPLPSSNERGLILKALARKKPIDVNVDLCAIGRMEACENLSGADLAALMNEAALAAAEEKSASTERTSDALTIKLSHFETALTKISPSVTDAQKQYYQRLAETFKAA 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01105 822 CDD RecA-like_NVL_r2-like 556 716 - -
Accr13g01105 822 ProSitePatterns AAA-protein family signature. 401 419 IPR003960 GO:0005524|GO:0016887
Accr13g01105 822 PANTHER AAA-FAMILY ATPASE 88 820 - -
Accr13g01105 822 FunFam Ribosome biogenesis ATPase RIX7 238 430 - -
Accr13g01105 822 ProSitePatterns AAA-protein family signature. 688 706 IPR003960 GO:0005524|GO:0016887
Accr13g01105 822 FunFam Cell division control protein 48 homolog C 432 540 - -
Accr13g01105 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 539 IPR027417 -
Accr13g01105 822 Gene3D - 719 798 - -
Accr13g01105 822 FunFam ATPase, AAA family protein 546 724 - -
Accr13g01105 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 819 IPR027417 -
Accr13g01105 822 Gene3D - 432 540 - -
Accr13g01105 822 Pfam AAA+ lid domain 740 778 IPR041569 -
Accr13g01105 822 Pfam AAA+ lid domain 454 489 IPR041569 -
Accr13g01105 822 MobiDBLite consensus disorder prediction 58 76 - -
Accr13g01105 822 Coils Coil 103 123 - -
Accr13g01105 822 MobiDBLite consensus disorder prediction 128 142 - -
Accr13g01105 822 Pfam ATPase family associated with various cellular activities (AAA) 287 430 IPR003959 GO:0005524|GO:0016887
Accr13g01105 822 Pfam ATPase family associated with various cellular activities (AAA) 589 717 IPR003959 GO:0005524|GO:0016887
Accr13g01105 822 SMART AAA_5 584 720 IPR003593 GO:0016887
Accr13g01105 822 SMART AAA_5 283 433 IPR003593 GO:0016887
Accr13g01105 822 MobiDBLite consensus disorder prediction 91 127 - -
Accr13g01105 822 Gene3D - 546 812 IPR027417 -
Accr13g01105 822 MobiDBLite consensus disorder prediction 226 246 - -
Accr13g01105 822 MobiDBLite consensus disorder prediction 58 164 - -
Accr13g01105 822 Gene3D - 239 430 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01105 Accr-Chr13 13741233 13746680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01105 519 818 Calmodulin-binding Proteins AT3G56690 42.623 3.67e-68 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01105 K14571 - gmx:100809594 1085.86