Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01091 ATGGATCTCTCCAAGAAGCCAAAGCTTGAAGACAACGGCGTCGTCACTTCCGATTCCGACTTAAACCTCACTCCTTCCGACGCTCGCAAAATCATTGAGCGCTTCAGCCCCGAGCAGCTCATCGATGTTCTCCAGGAAGCCGTCGTTCGTCACGCTGACGTCCTCGACGCCGTGCGGTCTGTCGCTGACCGTGATGTCACCCAACGCAAGTTGTTTATCCGTGGTCTTGGATGGGAGACCACCACTGAAGGCCTCCGCTCCCTGTTTTCCGCCTATGGTGAGCTTGAAGAAGTCATTGCCATTCTTGATAAGGCTACCGGTAAGTCCAAGGGTCATGGATTTGTCACCTTCATGCACGTTGATGGTGCTTTGCTTGCTCTGAAGGAGCCCAGCAAGAGGATAGATGGTCACGTTACTGTGACGCAGCTTGCAACAGCTGGGAATACGGGATCAAATACCAATGCTGCCGACGTAGCGATGCGGAAGATATATGTTGCGAATGTGCCGTCTGATCTGCCGGCCGATAAGTTGTTGGCTCACTTCTCACTTTATGGAGAGATTGAGGAGGGGCCATTAGGGTTTGATAAGCAGACTGGTAAGTGGAAGGAGTTTGCACTTTTTGTCACTACAAAAAAAACAGTTTTTTGCGGCGGAAAAATTCCCTCGCAAAAAAGCCATTTTCCGTCGCAAAACTGA 696 0.5072 MDLSKKPKLEDNGVVTSDSDLNLTPSDARKIIERFSPEQLIDVLQEAVVRHADVLDAVRSVADRDVTQRKLFIRGLGWETTTEGLRSLFSAYGELEEVIAILDKATGKSKGHGFVTFMHVDGALLALKEPSKRIDGHVTVTQLATAGNTGSNTNAADVAMRKIYVANVPSDLPADKLLAHFSLYGEIEEGPLGFDKQTGKWKEFALFVTTKKTVFCGGKIPSQKSHFPSQN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01091 231 SUPERFAMILY RNA-binding domain, RBD 68 205 IPR035979 GO:0003676
Accr13g01091 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 136 IPR000504 GO:0003723
Accr13g01091 231 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Accr13g01091 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 137 IPR000504 GO:0003723
Accr13g01091 231 Gene3D - 149 213 IPR012677 -
Accr13g01091 231 PANTHER GEO13361P1-RELATED 52 208 - -
Accr13g01091 231 SMART rrm1_1 70 142 IPR000504 GO:0003723
Accr13g01091 231 Gene3D - 45 148 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01091 Accr-Chr13 13510467 13511162 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01091 17 157 C2H2 Transcription Factor Family AT2G19380 37.762 8.99e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01091 K12741 - qsa:O6P43_001025 340.117