Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01088 ATGGATCCTACCAAGAAGCGAAAGCTTGATGACAACGGCGTCGTCACTTCCGATTCCGACTTAAACCTCACTCCTTCCGACGCTCGCAAAATCATTGAGCGCTTCAGCCCCGAGCAGCTCATCGATGTTCTTCAGGAAGCCGTCGTTCGTCACGCTGACGTCCTCGACACTGTGCGGTCTATCGCCGACCCTGATGTCACCCAACGCAAGCTGTTTATCCGTGGTCTTGGATGGGAGACCACCACTGACGGCCTCCGCTCCCTGTTTTCCGCCTATGGTGAGCTTGAAGAAGCCATTGTCATTCTTGATAAGGCCACCGGTAAGTCTAAGGGTTATGGATTTGTCACCTTCAAGCACGTTGATGGTGCTCTGCTTGCTCTGAAGGAGCCCAGCAAGAGGATAGATGGTCGCGTTACTGTGACGCAGCTTGCCGCAGCTGGCAATACGGGATCTAATACCAATGCTGCCGACGTAGCGATGCGGAAGATATATGTTGCGAATGTGCCGTCTGATCTACCGGCCGATAAATTGTTGGCTCACTTCTCACTTTATGGAGAGATTGAGGAGGGGCCATTAGGGTTTGATAAGCAGACTGGTAAGTCGAAGGGGTTTGCACTTTTTGTGTACAAGACGCCAGAGGGCGCGCAAGCGGCACTTGTGGATCCGGTGAAGATGGTTGAGGGAAGGCAGCTGAATTGCAAGTTAGCGATAACCGATGGGAAGCAAGGGAAGCGAGGTGGGACGGGGCCAATGGGTCCTGATGGAATTCAAGGTCCAGGGAATGCTCATGGTGATGGAATGGGTTTGGCCCCACCGTCTTCCATGCCAGGGTCACTTTCCGGTCAATACGGTGGGCCTGTCGGCATGGGATCTTATGGGGGCTTTGGGAGTGGGCTTCCTGGTCAACCTCCACTCGGTAATCATCCTCTCAACTCATCTGTGGGTGGAACGGGGTTGTCTTCGGCAGGTAGTCAGGTGCCCTCTTCTCTGGGAGTTACTGGCGGGTATAGTTCTGGGCTAGGTGGTCCATATGGTGGCTACAGTGGGCCTGGTTCAACTGGTTACGGTGCATTGGGGGGTGGTGCCGGTGCTGGTCTGGGTGGAGGTGCTGGTGGACTTGGTGGTGGATTGGGGGGTGCTAGTTCTTTGTACAGATTGCCAACTTCAGTAGGAATGCCAACAGGCGGCTATCAAGATGGTGGACCTTACGGTTTGTCGTATCCAAATCAACATCACCAACCTACTGGAGCCTCACCTGTACCTAGGGTCCCACCTGGTGCTATGTATCCGAATGTGCCTCCTTACTACTGA 1311 0.5408 MDPTKKRKLDDNGVVTSDSDLNLTPSDARKIIERFSPEQLIDVLQEAVVRHADVLDTVRSIADPDVTQRKLFIRGLGWETTTDGLRSLFSAYGELEEAIVILDKATGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNAADVAMRKIYVANVPSDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALVDPVKMVEGRQLNCKLAITDGKQGKRGGTGPMGPDGIQGPGNAHGDGMGLAPPSSMPGSLSGQYGGPVGMGSYGGFGSGLPGQPPLGNHPLNSSVGGTGLSSAGSQVPSSLGVTGGYSSGLGGPYGGYSGPGSTGYGALGGGAGAGLGGGAGGLGGGLGGASSLYRLPTSVGMPTGGYQDGGPYGLSYPNQHHQPTGASPVPRVPPGAMYPNVPPYY 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01088 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Accr13g01088 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Accr13g01088 436 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Accr13g01088 436 SMART rrm1_1 70 142 IPR000504 GO:0003723
Accr13g01088 436 SMART rrm1_1 162 234 IPR000504 GO:0003723
Accr13g01088 436 MobiDBLite consensus disorder prediction 239 266 - -
Accr13g01088 436 Gene3D - 50 152 IPR012677 -
Accr13g01088 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Accr13g01088 436 PANTHER GEO13361P1-RELATED 52 344 - -
Accr13g01088 436 SUPERFAMILY RNA-binding domain, RBD 154 264 IPR035979 GO:0003676
Accr13g01088 436 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Accr13g01088 436 Gene3D - 153 269 IPR012677 -
Accr13g01088 436 MobiDBLite consensus disorder prediction 296 327 - -
Accr13g01088 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Accr13g01088 436 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01088 Accr-Chr13 13468003 13469313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01088 157 336 C2H2 Transcription Factor Family AT2G19380 30.097 1.12e-11 64.7