Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01085 ATGGTTAACAGTAGCGTGTGCAGTCTCCGTACGCGTCGCCTACGTTTTCCTCATCTCCCGGAGACACCGCTATTCCCGCCACATCGTTTCTCAATTACTTGCCGGAGCAGGCGGACTCTGGTCACCGCCTCTGCAGTCTCTAAAAGGTACAAAAAGAAGGAGACTAAAGAGAAGGTCATTGTGATTTCTGGACCCACCGGCGCCGGTAAAAGTCGCCTTGCATTGGAACTCGCGAAGCGGCTCAATGGCGAAATTGTCAGTGCCGACTCTGTTCAGGTGTACCAAGGTCTTGATGTTGGATCCGCTAAACCCTCTCCAAATGACAGAAAGGAGGTAAAACATCATCTGCTTGACATATTGCATCCATCTAAAGACTATTCAGTTGGACAATTTTTTGAGGATGCAAGGCAAGCGACAAGATGTATCCTTGACAATGGTCGTGTTCCCATGGTTGTTGGGGGAACTGGGTTGTATTTACGATGGTTCATATATGGAAAACCAGATGTTCCCAAATCCTTTGCAGATGTCAAATCTGAAGTATATTCAGAGTTAGCTGAACTGCAGAAAAATGAAGATTGGGATGCTGCTGTGCAGCTGGTAGTTGATGCAGGTGACGCAATGGCCCAAACTTTAGCAGTGAATGATTGGTATCGATTACGGCGTAGCCTAGAGATTGTCAAATCTAGTGGATCGCCTCCATCTGCTTTTCGGGTGCCATATGATTCTTTCAAGGAACAGGGTGATTCTAGTGATACCAATGGTTTTGAATCTTCTGGTGTCCAAATTTCTGGAGATTCAATGGAAGATTCCAAGTTATCAGATTTGCCTTATGAGTTCATATGCTTTTTCCTTTCTAGTCAGAGACTTGACCTATATAAAACAATTGACCAGCGGTGTGAAGATATGCTGTTAGAAAGGGATGGGATTCTGTCTGAGGCTCGATGGCTTCTAAACTTGGGTCTGCATCCAAACTCCAATTCTGCAACACGAGCAATTGGTTATAGACAAGCCATGGAATACTTACGGAGATGCCAACAACATGGGGAGCAGAGTTCAGCTGAAGAATTTTACAATTTTTTATCTGAATTTCAAAAGGAAACTAGGAATTTTGCAAAACGACAATTGACATGGTTTCGCAACGAGCATATATACCACTGGCTCGATGCTTCCAAGCCACAGAGTGCAATTGTAGAATTCATGGACCATGCGTATCATGATTGGAGTGGAAATCTCATTGTGCCTGAACAACTTAGAATGTCTAGAGATATATCCAATCGCCAAGAAGCTGCTCAACTTAAGTCTTACCGCACGAAAAATAGGCATTTCATGAAAGATGAAGATTGTTCTCATATTCTGGAGTGGGTGAATCCGAAAGGTTGA 1380 0.4384 MVNSSVCSLRTRRLRFPHLPETPLFPPHRFSITCRSRRTLVTASAVSKRYKKKETKEKVIVISGPTGAGKSRLALELAKRLNGEIVSADSVQVYQGLDVGSAKPSPNDRKEVKHHLLDILHPSKDYSVGQFFEDARQATRCILDNGRVPMVVGGTGLYLRWFIYGKPDVPKSFADVKSEVYSELAELQKNEDWDAAVQLVVDAGDAMAQTLAVNDWYRLRRSLEIVKSSGSPPSAFRVPYDSFKEQGDSSDTNGFESSGVQISGDSMEDSKLSDLPYEFICFFLSSQRLDLYKTIDQRCEDMLLERDGILSEARWLLNLGLHPNSNSATRAIGYRQAMEYLRRCQQHGEQSSAEEFYNFLSEFQKETRNFAKRQLTWFRNEHIYHWLDASKPQSAIVEFMDHAYHDWSGNLIVPEQLRMSRDISNRQEAAQLKSYRTKNRHFMKDEDCSHILEWVNPKG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01085 459 Gene3D - 171 238 - -
Accr13g01085 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 187 IPR027417 -
Accr13g01085 459 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 56 394 IPR039657 -
Accr13g01085 459 Hamap tRNA dimethylallyltransferase [miaA]. 59 401 IPR018022 GO:0008033
Accr13g01085 459 Gene3D - 56 451 IPR027417 -
Accr13g01085 459 FunFam tRNA dimethylallyltransferase 9 167 238 - -
Accr13g01085 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 317 IPR027417 -
Accr13g01085 459 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 59 236 IPR018022 GO:0008033
Accr13g01085 459 Pfam IPP transferase 92 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01085 Accr-Chr13 13378823 13385312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01085 62 342 C2H2 Transcription Factor Family AT2G27760 25.260 5.31e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01085 K00791 - gmx:100808814 664.84