Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01078 ATGGGGGAGGGTGGCAATCATCACCAGCGAGCGACAACGAGGTCGTCGAGATTGGCTGTGAGGGGTGGAATGGGAGAGATCGTAGAGGTTCAAGGCGGCCACATTGTTCGCTCTACTGGACGCAAAGACCGTCACAGTAAGGTGTGTACCGCCAAGGGACCTAGAGATCGGCGAGTTCGTCTCTCCGCTCATACCGCCATTCAATTCTATGACGTCCAAGACCGCCTCGGCTACGACCGCCCTAGCAAAGCCGTCGATTGGCTCATTACGAATGCTAAAGCCGCCATAGATAAGCTTTCCAAGCTTCCGGCATGGAACCCCAATACGGTGAATCAAAATGCCCAGCAAGAGAAGGATCGACAGCAGAATCAGCAGATGAACGAGAGCCCTATTGGAGTTCACCGTCCGGCGGTGGATGCGTTGGATTCTGGTGGCCGGAGAACAAGTACGGTGGCGGATAGTGGCGGGAGAATTTTGGAACAATTGGATGAAAACCCTAACCGTGGTGGGTTGGATTTTCTGCTGCCGACTTTTGACGCTGACATTGCTGATTCTATGAAGTCTTTCTTCCCGATTGGGGTGTCAGCGCCGGAGACGAATTCTCCGTCGATTCAGTTTCAGACTTACGCACCAGATTTGCATTCGCGAACTAGTAGCGCCTGCCAGAACCAAGATCTACGGCTCTCGCTTCAGTCGTTGCAGGACCCGATTCTGCTTCACCAATCTCAAGCTCAGACCCAACACCACCAGAACGACCAATTTTTCTCTATGACGACTCCAGTGGGGTTCGATGTGGCTTCATTTCCGGAGGAACATGATCGATTTCATAGAATGGGAGCTTGGAATGTTGGTGCTGCTGATACGGGTAATGATGGCCACGGGGGCGGGGGAGGAGGAGGGTTTGTCTTCAACTCCCCGTCGCCGATTCCGGTGCTGCCGCCACCGTTTGGCCAGAGCCAGTTTCTTTCTCAGAGGGGTCCCCTTCAGTCCAGTAACACTCCTTTGATTCGTGCTTGGATAGATTCATCAATCGCCGCCACTCCTGATCACCAAAACCACTACCACTATCTTCCACCGACCGTTCATCAGCAATCTTCCATCTCCGGCGGCATCGGGTTTGATTCCGGTATCTTCACCGGTTTTCGTATCCCAGCACGAATCCAGGGTGAAAAGTTGTACGACGTCGTTTCTGACAAGCCGTCCCCTGCTTCATCTGATTCTCGCCATTGA 1230 0.5325 MGEGGNHHQRATTRSSRLAVRGGMGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLITNAKAAIDKLSKLPAWNPNTVNQNAQQEKDRQQNQQMNESPIGVHRPAVDALDSGGRRTSTVADSGGRILEQLDENPNRGGLDFLLPTFDADIADSMKSFFPIGVSAPETNSPSIQFQTYAPDLHSRTSSACQNQDLRLSLQSLQDPILLHQSQAQTQHHQNDQFFSMTTPVGFDVASFPEEHDRFHRMGAWNVGAADTGNDGHGGGGGGGFVFNSPSPIPVLPPPFGQSQFLSQRGPLQSSNTPLIRAWIDSSIAATPDHQNHYHYLPPTVHQQSSISGGIGFDSGIFTGFRIPARIQGEKLYDVVSDKPSPASSDSRH 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01078 409 ProSiteProfiles TCP domain profile. 41 99 IPR017887 -
Accr13g01078 409 MobiDBLite consensus disorder prediction 104 130 - -
Accr13g01078 409 Pfam TCP family transcription factor 40 134 IPR017887 -
Accr13g01078 409 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 330 IPR005333 GO:0003700
Accr13g01078 409 MobiDBLite consensus disorder prediction 104 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01078 Accr-Chr13 13224250 13225479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01078 14 409 TCP Transcription Factor Family AT3G15030 47.887 1.74e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Accr13g01078 TCP 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01078 - - qsa:O6P43_001018 429.483