Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01065 ATGACTGGTTCAGATATGAATCAACAAAGGCATGGGAATTCTAATTCTGAACCTTCTATCCCTGTCAGTAGTGCCAACGTTTTGCAGCCAAATATCCGCACAGTGGCAACAGCTTCAGGGAACACGAGTAATCTTGATGTCTATGACAATGGTGTAATGTATAGAGGGACACAATACAATGCCATTCAGAATCAGCGTAATATTGATATGGGTGTTGCAGCTGTGACCAACTTGCATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTGCCTCTCCCTACTAATCACGGAGCCTATGATCAGTCGCCAGCATCAAGCACACTTGCTGTGTGTGGAGTTTATTCAGATAATTTTGGAATGAGCACCAGTTACACTGGTGACATAAGAGCTTCATTCAAAAGAAAAAATGCTGAAACTTTTAGAGGCAATTTCCCACATTTTGATGCGTCAGCTAGTTCTTCAGTTGTTCCCCCACATGCAAGGCATTCTGATGGGGTTACTATGATGGATACTGCTTCCTTGCCTCCGACTCAATTCCAAGGAAATAGCGTCCCTTCACTCATGGAATTAGGTCCCCCTGGTAGTTTGTGGAGCAGGTCAGGTGAGTCTGTTGCAGTGCATGAACAGAGCCATTTTATTCAAAGTAATTATTTAGGGCAGCCCTTCCAGCTAGTTGCTCCTCCCTGGTTGGATCAACAGTTGAATAGAAGTCACAGTGATGGACATACTACAGCCTGGAATCAGTCTCTTCCAATGCTTTATATACAAGCACCCAATGTTAATGGAAGTTCATTAGAGAATGCGAATATGGGTTTGCAGAGATATCATGATGCAGCTAATAACATAAATGGCCTCAGGTTTGTTCATCCTCCTGTCAACCACCAGCACCATAATTATCATCACCCGGCAATACCAATCAGAGGATTCAGAGGCCACAATGTAGTTTTTCAACCTCCAGCAACTGCAGCTTCTTATAGAGTTCCAACAAATCCTTTACACAACACTATGATCCCAGCGCACAACGGTTTTGAGATGGGTCATAGGCATGCTGTTGGCCTTGTACCATCAGCAGGCCTACAGGTATATCATCCTCATAGACGATACATGAATGAGACAGCAATTGGGCATCAAAATCTTCACCCTATGGGCTATGTCCAAGTTGATGCAGATGTTGCAATATTGGATGAAGTGGGATTAGTCGACCATCACAGAGATATGCGCTTGGACATAGATAATATGTCTTATGAGGATCTTCTTGCATTGGGCGATCAAATTGGCCATGTAAGCACTGGTTTATCAGAAGAGACCATTTCAGCTGTAATGAAAACTGGAATTCATTCAACCTGCACTATTATTAATCTGGAAGAGGAGGAAGAAACTTCAAAGCATGAGGAAACTGAATGCTCAATATGCCTAGAAAAAATTTTGAACCGAGAGAAGATAGGATTTCTTAAATGTGGTCATGAGCATCATGCAGATTGCTTGAAGAAATGGCTTCGTGAGAAAAATACCTGTCCCCTATGCAAATTTGAACCAGGAAAGGAAAAAGGAGAAAAGAAATAA 1569 0.4219 MTGSDMNQQRHGNSNSEPSIPVSSANVLQPNIRTVATASGNTSNLDVYDNGVMYRGTQYNAIQNQRNIDMGVAAVTNLHYSGMNPSSSTGVLPLPTNHGAYDQSPASSTLAVCGVYSDNFGMSTSYTGDIRASFKRKNAETFRGNFPHFDASASSSVVPPHARHSDGVTMMDTASLPPTQFQGNSVPSLMELGPPGSLWSRSGESVAVHEQSHFIQSNYLGQPFQLVAPPWLDQQLNRSHSDGHTTAWNQSLPMLYIQAPNVNGSSLENANMGLQRYHDAANNINGLRFVHPPVNHQHHNYHHPAIPIRGFRGHNVVFQPPATAASYRVPTNPLHNTMIPAHNGFEMGHRHAVGLVPSAGLQVYHPHRRYMNETAIGHQNLHPMGYVQVDADVAILDEVGLVDHHRDMRLDIDNMSYEDLLALGDQIGHVSTGLSEETISAVMKTGIHSTCTIINLEEEEETSKHEETECSICLEKILNREKIGFLKCGHEHHADCLKKWLREKNTCPLCKFEPGKEKGEKK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01065 522 SUPERFAMILY RING/U-box 461 513 - -
Accr13g01065 522 CDD RING-H2_RNF24-like 470 511 - -
Accr13g01065 522 ProSiteProfiles Zinc finger RING-type profile. 470 511 IPR001841 -
Accr13g01065 522 SMART ring_2 470 510 IPR001841 -
Accr13g01065 522 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 100 511 IPR045191 GO:0061630
Accr13g01065 522 MobiDBLite consensus disorder prediction 1 23 - -
Accr13g01065 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 515 IPR013083 -
Accr13g01065 522 Pfam Ring finger domain 469 511 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01065 Accr-Chr13 13002714 13004904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01065 362 513 C3H Transcription Factor Family AT2G15530 43.137 3.46e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01065 K19041 - qsa:O6P43_029149 520.39