Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01041 ATGGAAGCCAAGATGGAGAGGAAGGGAACTTTAGTTGAGAAGGTAAGGAAGGATAATAACATAGTTGAAGAAGAAGAAGTAGAGGATGAGATAGAAGATGAAGAAGAAAACGGTGGTGGAGGCGGCGATGTTGCAGAAGAGCAGAAGAGGAAAGGTGTCATGGGAAGTGGAAGAAGAGTGTCAAGTGGAAGTGGTGGAGTTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGGAGCTGATCTGAGTGATGCAAAGCGGTACCATCGCCGCCATAGGGTGTGCGAGTTCCACTCCAAGGCGCCGGTTGTCATGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGATTTGGGGGAATTTGATGAGGCCAAGAGAAGCTGTCGAAGGCGCTTGGCTGGGCACAACGAACGTCGCCGCAAAAGCACTGGTGAAATTTACAATGAGAGCTGCAGCCGAGGCAAAGGTCACCACACAAAGGAGAGCCATTGCAGGCATGCTGATGGTAGAGGAAGAGTTCAAATGAGCGTTCCTGGGAGTTCTGGCTACAAATCTTTTCACATAAAATAA 582 0.4966 MEAKMERKGTLVEKVRKDNNIVEEEEVEDEIEDEEENGGGGGDVAEEQKRKGVMGSGRRVSSGSGGVSPPSCQAERCGADLSDAKRYHRRHRVCEFHSKAPVVMVAGLRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKSTGEIYNESCSRGKGHHTKESHCRHADGRGRVQMSVPGSSGYKSFHIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01041 193 Coils Coil 17 37 - -
Accr13g01041 193 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Accr13g01041 193 MobiDBLite consensus disorder prediction 1 22 - -
Accr13g01041 193 SUPERFAMILY SBT domain 70 150 IPR036893 GO:0003677|GO:0005634
Accr13g01041 193 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 154 IPR044817 GO:0003677
Accr13g01041 193 Pfam SBP domain 72 145 IPR004333 GO:0003677
Accr13g01041 193 MobiDBLite consensus disorder prediction 142 174 - -
Accr13g01041 193 MobiDBLite consensus disorder prediction 137 193 - -
Accr13g01041 193 MobiDBLite consensus disorder prediction 1 75 - -
Accr13g01041 193 MobiDBLite consensus disorder prediction 23 41 - -
Accr13g01041 193 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Accr13g01041 193 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01041 Accr-Chr13 12666905 12667909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01041 63 149 SBP-box Gene Family AT2G33810 70.115 1.11e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr13g01041 SBP 8.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01041 - - aprc:113864686 241.506