Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01040 ATGGTGGTTTTGAGATATTTATTGATGAGTTTTCTCCAATGGGTGTTCTTGGCTTGTTTTCTTTGCTTATCTCTGGGTCTGAAAACCTCAAACCCATCTTGTGACTCTCGTGATCTGCTGGCTCTGAGGCAATTTGCTGGTAACCTCACAAATGGGACTATTATCAAATCATGGTCCTCTGATATTGATTGCTGCAAATGGGCTGGAGTTTTCTGTGATAATAATTTGACTGATGAGACAACTGGTAATAGAGTGACCAAGTTGGTTCTGCCTCAAATGGGTCTGAAAGGTGCAATTTCTAGTTCTCTAGCGCAATTAGATCACTTAATTGTGCTGGATCTTTCGTTCAATCATCTCCAAGGTGCGTTGCCCGTGGAATTCTCCAAGTTGAAGCTGTTGAAATTTCTGGATTTGAGCCATAATGTGCTGTCAGGACCTGTTGCTGAAGCTCTTTCTGGTTTGAAATCTATTCAGACTCTCAATATTTCCAGCAATTCAATTATTGGAAATCTCTCTGAGTTTGGGGAATTTCCTCATCTCGTTGCATTGAACATAAGCAACAATTTATTCAACGGTCAGTTCAATTCTCAAATTTGCAGTTCCTCTAAGGGGATCCATGTGCTTGATTTATCGTTGAATCGGTTTGCTGGTGGCCTCGAAGGCTTGGAAAAATGTAACACATCTCTTCAGGAGTTGCATTTGGATAATAATTTATTTTCAGGGCCTCTTCCAGATGCTTTGTACTCATTGTCAGCCTTGGAGCAACTCTCTATGTCTTTGAACAATTTCTCGGGTCAGTTAAGCACCCAACTAAGTAAGCTCTCTAGCCTAAAGTCTATAGTGATTTCTGGGAACCAGTTTTCTGGGCTACTCCCAAATGTGTTTGGGAATTTGTCTGATTTAGAACAATTAGCAGCACACACCAATTCATTTTCTGGGCCGTTGCCATCTAGCCTGGCTTTATGCTCAAAGCTTCGGGTGCTTGATCTTCGAAACAATTCTCTGGCAGGTCGAATTGATCTTAATTTCACTGGATTGTCTAATCTGTGTAACCTTGATCTTGCATCTAATCATTTTACTGGCCCTCTTCCTAGCTCCTTGTCCAATTGCCGCAAATTGAAAGTTTTGAGCCTTGCTAAGAATGGGTTGACTGGTTCAATTCCTGAAAACTATGCGAACCTTTCATCGCTGTTCTTTCTGTCTCTGTCAAACAACAGCATAGGGAACTTATCCGTTGCACTATCGGTGCTGCAGCATTGTAAGAACCTCACTACACTTGTCCTCACAAAGAATTTCCGTGGTGAGGAAATGCCCAAAAGTGTTTTGGGCTTTGAGAGCCTTATGGTTTTAGCACTGGGAAATTGTGGTCTTAAAGGCCAGGTCCCTGATTGGCTATTGAATTGCAGCAAATTAGCCGTCCTTGATTTGTCTTGGAACCATTTGGAAGGTAGTGTCCCTTCTTGGATTGGTCAGATGGACAATTTGTTCTACCTGGATTTCTCAAACAATTCTTTCGCGGGAGAAATGCCTAAAAGTTTGACACAGTTGAAGGGCCTTGTATCCACAAATTGCACTAGACCAAATCTGTCTGCATCTGCCGGTGTTCCTCTCTATGTTAAGAGAAACAAGAGTGTTAATGGGCTGCCATATAACCAGGCTTCAAGTTTCCCTCCGTCATTATTATTGAGCAACAACAGATTGAATGGAACGATATGTCCAGAAATCGGGCAACTCAAAGCACTGCATGTCTTGGACTTGAGCAGGAACGAAATCTCTGGTACAATTCCTAGCAGTATTTCGGCGATGGAGAACTTAGAAATATTAGATCTGTCATATAATGATCTCTCTGGGATTATCCCCCAGTCATTTAACAACCTCACATTCTTGTCAAAGTTCAGCGTGGCATATAATCACTTGCAGGGACAAATTCCAACTGATGGACAATTTCTAAGCTTTCCTAGTACAAGTTTTGAGGGCAACCCAGGTCTTTGTGGTGGAATGATTTCTCAATGCAAACCCCACGATGTGGAATGGAGATCCAATATGCCTTCTGGTTCTTCCAGCAGATTTGGTAGAAACAATGTCCTTGGTATAACAATCAGTATAGGTGTAGGGCTTGCCCTGCTTCTTGCCATTGTTCTGCTAAAAGTATCAAAAAGGGATGAAGAGAAGCCAGTTGAAAACTATGATGAGGAATTGGGTCGGCCTCCTAGGTTATCTGAGGGACTTGTTTCTTCAAAATTGGTTCTTTTTCAGAATTCAGACTGCAAAGATCTCACGGTTGCAGATTTGTTGAAATCCACAAACAATTTCAACCAGGCAAACATTATTGGTTGTGGTGGGTTTGGTCTCGTGTACAAGGCAAATCTTCCCAATGGCACAAAAGCCGCAGTCAAGAGGCTTTCTGGGGACTGTGGTCAGATGGAGCGTGAATTCCAAGCCGAAGTGGAGGCCCTTTCCAGAGCTCAGCACAGGAACCTTGTGTCTCTTAAAGGTTATTGCCGGCACGGCAATGTCAGATTGTTAATTTATTCCTACTTGGAGAATGGAAGTTTGGATTACTGGCTGCATGAGTGTGTGGATGCAAATTCAGCTCTGAAATGGGATGTGAGACTCAAGATTGCAAAAGGTGCAGCTCATGGATTAGCTTACTTGCACAAGGGTTGTGAGCCGTTCATAGTTCATCGCGATGTTAAATCTAGCAATATACTTCTGGATGATAAATTTGAAGCTCGTTTGGCTGATTTTGGCCTTTCAAGGCTACTTCAGCCATATGACACCCATGTTACAACAGATTTAGTCGGTACATTGGGATATATTCCACCAGAGTATAGTCAGACTTTAACAGCAACCTTCAGGGGCGATGTCTATAGCTTCGGTGTTGTTCTGCTCGAGCTTCTCACTGGTAGAAGGCCAGTAGAAGTCATCAAGGGTAAAAACTGCAGGAACCTGGTGTCTTGGGTCTTTCAGATGAAATCTGAAAACAAGGAGCAGGAAATTTTCGACCCGGCCATTTGGGACAAGGATAATGAGAAGCAGCTCTTGGAGGTACTGTCCATTGCTTGTAGGTGTTTGGACCAGGAACCAAGGCAAAGACCCTCTATCGAAGAAGTTGTTTCGTCGCTTGATCGCATAGGAGCTGATGGTTTACAACAATGA 3159 0.4283 MVVLRYLLMSFLQWVFLACFLCLSLGLKTSNPSCDSRDLLALRQFAGNLTNGTIIKSWSSDIDCCKWAGVFCDNNLTDETTGNRVTKLVLPQMGLKGAISSSLAQLDHLIVLDLSFNHLQGALPVEFSKLKLLKFLDLSHNVLSGPVAEALSGLKSIQTLNISSNSIIGNLSEFGEFPHLVALNISNNLFNGQFNSQICSSSKGIHVLDLSLNRFAGGLEGLEKCNTSLQELHLDNNLFSGPLPDALYSLSALEQLSMSLNNFSGQLSTQLSKLSSLKSIVISGNQFSGLLPNVFGNLSDLEQLAAHTNSFSGPLPSSLALCSKLRVLDLRNNSLAGRIDLNFTGLSNLCNLDLASNHFTGPLPSSLSNCRKLKVLSLAKNGLTGSIPENYANLSSLFFLSLSNNSIGNLSVALSVLQHCKNLTTLVLTKNFRGEEMPKSVLGFESLMVLALGNCGLKGQVPDWLLNCSKLAVLDLSWNHLEGSVPSWIGQMDNLFYLDFSNNSFAGEMPKSLTQLKGLVSTNCTRPNLSASAGVPLYVKRNKSVNGLPYNQASSFPPSLLLSNNRLNGTICPEIGQLKALHVLDLSRNEISGTIPSSISAMENLEILDLSYNDLSGIIPQSFNNLTFLSKFSVAYNHLQGQIPTDGQFLSFPSTSFEGNPGLCGGMISQCKPHDVEWRSNMPSGSSSRFGRNNVLGITISIGVGLALLLAIVLLKVSKRDEEKPVENYDEELGRPPRLSEGLVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKANLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHRNLVSLKGYCRHGNVRLLIYSYLENGSLDYWLHECVDANSALKWDVRLKIAKGAAHGLAYLHKGCEPFIVHRDVKSSNILLDDKFEARLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAIWDKDNEKQLLEVLSIACRCLDQEPRQRPSIEEVVSSLDRIGADGLQQ 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01040 1052 ProSiteProfiles Leucine-rich repeat profile. 604 625 IPR001611 GO:0005515
Accr13g01040 1052 SMART LRR_typ_2 274 297 IPR003591 -
Accr13g01040 1052 SMART LRR_typ_2 602 625 IPR003591 -
Accr13g01040 1052 SMART LRR_typ_2 130 153 IPR003591 -
Accr13g01040 1052 SMART LRR_typ_2 578 601 IPR003591 -
Accr13g01040 1052 SMART LRR_typ_2 106 129 IPR003591 -
Accr13g01040 1052 SMART LRR_typ_2 394 417 IPR003591 -
Accr13g01040 1052 SMART LRR_typ_2 346 370 IPR003591 -
Accr13g01040 1052 SUPERFAMILY L domain-like 548 664 - -
Accr13g01040 1052 ProSiteProfiles Protein kinase domain profile. 771 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01040 1052 SUPERFAMILY L domain-like 58 266 - -
Accr13g01040 1052 Gene3D Ribonuclease Inhibitor 223 295 IPR032675 -
Accr13g01040 1052 SMART serkin_6 771 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01040 1052 PRINTS Leucine-rich repeat signature 602 615 - -
Accr13g01040 1052 PRINTS Leucine-rich repeat signature 133 146 - -
Accr13g01040 1052 Pfam Protein kinase domain 772 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01040 1052 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 271 1044 - -
Accr13g01040 1052 Gene3D Ribonuclease Inhibitor 296 677 IPR032675 -
Accr13g01040 1052 FunFam Phytosulfokine receptor 1 735 846 - -
Accr13g01040 1052 ProSitePatterns Protein kinases ATP-binding region signature. 777 799 IPR017441 GO:0005524
Accr13g01040 1052 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 75 304 - -
Accr13g01040 1052 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Accr13g01040 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672|GO:0006468
Accr13g01040 1052 FunFam Leucine-rich repeat receptor-like protein kinase 847 1052 - -
Accr13g01040 1052 Gene3D Ribonuclease Inhibitor 34 222 IPR032675 -
Accr13g01040 1052 Gene3D Transferase(Phosphotransferase) domain 1 847 1050 - -
Accr13g01040 1052 SUPERFAMILY Protein kinase-like (PK-like) 752 1042 IPR011009 -
Accr13g01040 1052 CDD STKc_IRAK 777 1045 - -
Accr13g01040 1052 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
Accr13g01040 1052 Pfam Leucine rich repeat 324 383 IPR001611 GO:0005515
Accr13g01040 1052 Pfam Leucine rich repeat 446 504 IPR001611 GO:0005515
Accr13g01040 1052 Pfam Leucine rich repeat 84 143 IPR001611 GO:0005515
Accr13g01040 1052 FunFam Tyrosine-sulfated glycopeptide receptor 1 343 676 - -
Accr13g01040 1052 SUPERFAMILY L domain-like 205 530 - -
Accr13g01040 1052 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Accr13g01040 1052 Gene3D Phosphorylase Kinase; domain 1 740 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01040 Accr-Chr13 12628986 12632144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01040 13 1048 Receptor kinase-like Gene Family AT1G55610 32.900 1.70e-163 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Accr13g01040 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01040 - - gmx:100797812 1529.23