Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01025 ATGGCAAGTTTCTCCGGGGTTCATGAATACGAGGTTGCGGTTGGCCCTCATGTTCATTCTGTAAAATGGGGTGATGTTAGTTTGAGGCAGTGGATAGATAAACCTGAACGCTTGGTAGATGAATTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAACACAGCACATTCTCAAGGAATCGTTGTTCATAATGTGAGGCCCTCATGCTTTGTCATGTCATCTTTCAATCACATCTCCTTCATTGAGTCTGAAACTTGTTCAGGTTCTGGATCAGATTCTTTAGAAAATGGAGTAAACAGCCTAGGCACTCAGATTAAAAAAAACCCTGCATTTTTCTGTTCCCATGATATGCATCATCAGAGAAGTTCAGATTCTAGTTGCATGCTGTCCAAAGCAGCGTATGCAGCTCGCGCTTCTTTAACTGAAGATACGGAAGAAAATGAAGTCAGAGACAGGATGAACACTGAAGAAATAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGTTACTGCTAATGGAGACTAGTTGGTATACTAGTCCTGAAGAGGTGGCTGGTACTTCAAGTTCCTTTGCTTCAGACATCTACCGGCTAGGGGTTCTTCTGTTTGAGCTACTCTGTCCATTCAGCTCAGAAGAAGAAAAGAGCAGAACAATGTCCAGTCTTAGACATAGAGTTCTTCCTCCACAGTTACTTCAGAAGTGGCCCAAAGAAGCTTCCTTCTGCTTATGGTTGCTTCACCCTGAACCTAGTAGTCGTCCAACACTAGGAGAGTTGTTGCAGAGTGGGTTCCTTAATGAACAGCGAGATCATATGGAAGAACGTGAAGCAGCTATAGAACTGAGAGAAAAAATAGAGGAACAAGAGTTGTTACTAGAATTCCTTTTGTCAATTCAGCAGAGAAAAAAGGGTGTTGCTGATAATTTGCAGCGTATTGTTTCTTTTGTGTGGTCAGATATTGAAGAAGCCACCAAGCCACAAATAGTATCTAAAGAAGTTGTTGAGAGTGAAGATTCTGCTGGCCTAAAGACTACAAAGCATATCAAATCAGAAATGTATCCTTGCAAAATTCAAAAATGCAATGATCAAAACAATTGTGGAGATGTTTTTTCAAATAAATCTCGGCTAATGAAGAACTTCAAGAAACTAGAGTCAGAGTACTTTTTAATGCGATGTAAGTCATCGATGAAACCAATGGTTACTGATGGTAAAGGCTCCATTGTGATGACTGAAAGAGGTTTTGTCAATAACTTTGCCTCAAAAGACCAATGCAGAGAGGAAAGAATTGCTAGAAAGAATTATTTTCTAGAGGGTTTGTGCAAGTACCTATGTTTCAGTAAGCTAAAGGTTAAGGCTGACCTGAAACAAGGCGATCTGTTGCAATCTTCGAACCTAGTATGCGCACTCAGTTTCAATCGTGAAGAGGCATTTTTGGCTACTGCTGGCGTGAGTAAAAAAATTCAAGTTTTTGATTATGAGTCAATCATAAACGAGGATCGTGAGATCAGCTATCCAGTTGTGGAGATAGCTAGCAGGTCAAAGTTGAGCAGCATATGTTGGAACACTTACATCAAAAGCCAAATAGCTTCTAGCAACTTTGAAGGTGTAGTACAGTTATGGGATGTGACACGAAGTCAACCACTGTCTGAAATGATGGAGCATGAGAGGCGGGTATGGTCCATCGATTTCTCATCAGCAGACCCGAAAATGTTGGCAAGCGGGAGCGATGACTGTTCTGTGAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACAAAAGCTAATGTATGCAGTGTTCAGTTTCCCCCAGATTCTGGTCGTTTCGTTGCGTTTGGTTCAGCAGATCATCGAATATATCACTATGATCTGAGGAACTTAAAAACGCCTCTCCATATATTTTCTGGACATGATAAGACTGTGAGTTACATCAAGTTTGTGGACAGTGTGAACCTTGTCTCTGCATCCACAGACAACACTTTGAAGCTTTGGGATTTTCCTGCATGCCCATCTGAAGTCATAAACACACCACTTCAAACATTCACAGGTCACATGAATGTAAAGAACTTTGTGGGATTGTCAGTATCTGATGAATTCATTGCCACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCAATGTCTTTCAAGTTTCAGGACAGAGACCCAGTTTCTGGGAAACAATTGGATGATTCTGCACAGTTCATCTCTTCTGTTTGCTGGCGAGGTCAGTCAAACACCTTAGTTGCTGCAAATTCCACTGGGAATCTCAAAATTCTGGAGATGGTTTGA 2331 0.4097 MASFSGVHEYEVAVGPHVHSVKWGDVSLRQWIDKPERLVDEFECLHIFRQIVEIVNTAHSQGIVVHNVRPSCFVMSSFNHISFIESETCSGSGSDSLENGVNSLGTQIKKNPAFFCSHDMHHQRSSDSSCMLSKAAYAARASLTEDTEENEVRDRMNTEEIEGKKQSFPMKQLLLMETSWYTSPEEVAGTSSSFASDIYRLGVLLFELLCPFSSEEEKSRTMSSLRHRVLPPQLLQKWPKEASFCLWLLHPEPSSRPTLGELLQSGFLNEQRDHMEEREAAIELREKIEEQELLLEFLLSIQQRKKGVADNLQRIVSFVWSDIEEATKPQIVSKEVVESEDSAGLKTTKHIKSEMYPCKIQKCNDQNNCGDVFSNKSRLMKNFKKLESEYFLMRCKSSMKPMVTDGKGSIVMTERGFVNNFASKDQCREERIARKNYFLEGLCKYLCFSKLKVKADLKQGDLLQSSNLVCALSFNREEAFLATAGVSKKIQVFDYESIINEDREISYPVVEIASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQPLSEMMEHERRVWSIDFSSADPKMLASGSDDCSVKLWSINQGVSVGTIKTKANVCSVQFPPDSGRFVAFGSADHRIYHYDLRNLKTPLHIFSGHDKTVSYIKFVDSVNLVSASTDNTLKLWDFPACPSEVINTPLQTFTGHMNVKNFVGLSVSDEFIATGSETNEVFIYHKAFPMPAMSFKFQDRDPVSGKQLDDSAQFISSVCWRGQSNTLVAANSTGNLKILEMV 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01025 776 Coils Coil 271 294 - -
Accr13g01025 776 Gene3D Transferase(Phosphotransferase) domain 1 25 280 - -
Accr13g01025 776 PANTHER PROTEIN SPA1-RELATED 2 22 776 IPR044630 GO:0009640
Accr13g01025 776 SMART WD40_4 459 494 IPR001680 GO:0005515
Accr13g01025 776 SMART WD40_4 680 719 IPR001680 GO:0005515
Accr13g01025 776 SMART WD40_4 547 587 IPR001680 GO:0005515
Accr13g01025 776 SMART WD40_4 735 774 IPR001680 GO:0005515
Accr13g01025 776 SMART WD40_4 590 629 IPR001680 GO:0005515
Accr13g01025 776 SMART WD40_4 633 671 IPR001680 GO:0005515
Accr13g01025 776 SMART WD40_4 505 544 IPR001680 GO:0005515
Accr13g01025 776 SMART serkin_6 3 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01025 776 Pfam WD domain, G-beta repeat 556 587 IPR001680 GO:0005515
Accr13g01025 776 Pfam WD domain, G-beta repeat 635 671 IPR001680 GO:0005515
Accr13g01025 776 ProSiteProfiles Protein kinase domain profile. 1 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01025 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 640 671 - -
Accr13g01025 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 640 671 IPR001680 GO:0005515
Accr13g01025 776 PRINTS G protein beta WD-40 repeat signature 574 588 IPR020472 -
Accr13g01025 776 PRINTS G protein beta WD-40 repeat signature 658 672 IPR020472 -
Accr13g01025 776 PRINTS G protein beta WD-40 repeat signature 531 545 IPR020472 -
Accr13g01025 776 Gene3D - 439 776 IPR015943 GO:0005515
Accr13g01025 776 SUPERFAMILY Protein kinase-like (PK-like) 26 271 IPR011009 -
Accr13g01025 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 554 591 - -
Accr13g01025 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 596 IPR001680 GO:0005515
Accr13g01025 776 SUPERFAMILY WD40 repeat-like 465 773 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01025 Accr-Chr13 12299536 12304467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01025 544 718 Miscellaneous Gene Families AT5G08390 24.581 2.22e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Accr13g01025 WD40 0.00029 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01025 K26557 - pcin:129313660 1210.67