Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01024 ATGGCAAGTTTCTCCGGGGTTCATGAATACGAGGTTGCGGTTGGCCCTCATGTTCATTCTGTAAAATGGGGTGATGTTAGTTTGAGGCAGTGGATAGATAAACCTGAACGCTTGGTAGATGAATTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAACACAGCACATTCTCAAGGAATCGTTGTTCATAATGTGAGGCCCTCATGCTTTGTCATGTCATCTTTCAATCACATCTCCTTCATTGAGTCTGAAACTTGTTCAGGTTCTGGATCAGATTCTTTAGAAAATGGAGTAAACAGCCTAGGCACTCAGATTAAAAAAAACCCTGCATTTTTCTGTTCCCATGATATGCATCATCAGAGAAGTTCAGATTCTAGTTGCATGCTGTCCAAAGCAGCGTATGCAGCTCGCGCTTCTTTAACTGAAGATACGGAAGAAAATGAAGTCAGAGACAGGATGAACACTGAAGAAATAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGTTACTGCTAATGGAGACTAGTTGGTATACTAGTCCTGAAGAGGTGGCTGGTACTTCAAGTTCCTTTGCTTCAGACATCTACCGGCTAGGGGTTCTTCTGTTTGAGCTACTCTGTCCATTCAGCTCAGAAGAAGAAAAGAGCAGAACAATGTCCAGTCTTAGACATAGAGTTCTTCCTCCACAGTTACTTCAGAAGTGGCCCAAAGAAGCTTCCTTCTGCTTATGGTTGCTTCACCCTGAACCTAGTAGTCGTCCAACACTAGGCAGAGAGTTGTTGCAGAGTGGGTTCCTTAATGAACAGCGAGATCATATGGAAGAACGTGAAGCAGCTATAGAACTGAGAGAAAAAATAGAGGAACAAGAGTTGTTACTAGAATTCCTTTTGTCAATTCAGCAGAGAAAAAAGGGTGTTGCTGATAATTTGCAGCGTATTGTTTCTTTTGTGTGGTCAGATATTGAAGAAGCCACCAAGCCACAAATAGTATCTAAAGAAGTTGTTGAGAGTGAAGATTCTGCTGGCCTAAAGACTACAAAGCATATCAAATCAGAAATGTATCCTTGCAAAATTCAAAAATGCAATGATCAAAACAATTGTGGAGATGTTTTTTCAAATAAATCTCGGCTAATGAAGAACTTCAAGAAACTAGAGTCAGAGTACTTTTTAATGCGATGTAAGTCATCGATGAAACCAATGGTTACTGATGGTAAAGGCTCCATTGTGATGACTGAAAGAGGTTTTGTCAATAACTTTGCCTCAAAAGACCAATGCAGAGAGGAAAGAATTGCTAGAAAGAATTATTTTCTAGAGGGTTTGTGCAAGTACCTATGTTTCAGTAAGCTAAAGGTTAAGGCTGACCTGAAACAAGGCGATCTGTTGCAATCTTCGAACCTAGTATGCGCACTCAGTTTCAATCGTGAAGAGGCATTTTTGGCTACTGCTGGCGTGAGTAAAAAAATTCAAGTTTTTGATTATGAGTCAATCATAAACGAGGATCGTGAGATCAGCTATCCAGTTGTGGAGATAGCTAGCAGGTCAAAGTTGAGCAGCATATGTTGGAACACTTACATCAAAAGCCAAATAGCTTCTAGCAACTTTGAAGGTGTAGTACAGTTATGGGATGTGACACGAAGTCAACCACTGTCTGAAATGATGGAGCATGAGAGGCGGGTATGGTCCATCGATTTCTCATCAGCAGACCCGAAAATGTTGGCAAGCGGGAGCGATGACTGTTCTGTGAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACAAAAGCTAATGTATGCAGTGTTCAGTTTCCCCCAGATTCTGGTCGTTTCGTTGCGTTTGGTTCAGCAGATCATCGAATATATCACTATGATCTGAGGAACTTAAAAACGCCTCTCCATATATTTTCTGGACATGATAAGACTGTGAGTTACATCAAGTTTGTGGACAGTGTGAACCTTGTCTCTGCATCCACAGACAACACTTTGAAGCTTTGGGATTTTCCTGCATGCCCATCTGAAGTCATAAACACACCACTTCAAACATTCACAGGTCACATGAATGTAAAGAACTTTGTGGGATTGTCAGTATCTGATGAATTCATTGCCACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCAATGTCTTTCAAGTTTCAGGACAGAGACCCAGTTTCTGGGAAACAATTGGATGATTCTGCACAGTTCATCTCTTCTGTTTGCTGGCGAGGTCAGTCAAACACCTTAGTTGCTGCAAATTCCACTGGGAATCTCAAAATTCTGGAGATGGTTTGA 2334 0.41 MASFSGVHEYEVAVGPHVHSVKWGDVSLRQWIDKPERLVDEFECLHIFRQIVEIVNTAHSQGIVVHNVRPSCFVMSSFNHISFIESETCSGSGSDSLENGVNSLGTQIKKNPAFFCSHDMHHQRSSDSSCMLSKAAYAARASLTEDTEENEVRDRMNTEEIEGKKQSFPMKQLLLMETSWYTSPEEVAGTSSSFASDIYRLGVLLFELLCPFSSEEEKSRTMSSLRHRVLPPQLLQKWPKEASFCLWLLHPEPSSRPTLGRELLQSGFLNEQRDHMEEREAAIELREKIEEQELLLEFLLSIQQRKKGVADNLQRIVSFVWSDIEEATKPQIVSKEVVESEDSAGLKTTKHIKSEMYPCKIQKCNDQNNCGDVFSNKSRLMKNFKKLESEYFLMRCKSSMKPMVTDGKGSIVMTERGFVNNFASKDQCREERIARKNYFLEGLCKYLCFSKLKVKADLKQGDLLQSSNLVCALSFNREEAFLATAGVSKKIQVFDYESIINEDREISYPVVEIASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQPLSEMMEHERRVWSIDFSSADPKMLASGSDDCSVKLWSINQGVSVGTIKTKANVCSVQFPPDSGRFVAFGSADHRIYHYDLRNLKTPLHIFSGHDKTVSYIKFVDSVNLVSASTDNTLKLWDFPACPSEVINTPLQTFTGHMNVKNFVGLSVSDEFIATGSETNEVFIYHKAFPMPAMSFKFQDRDPVSGKQLDDSAQFISSVCWRGQSNTLVAANSTGNLKILEMV 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01024 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 555 597 IPR001680 GO:0005515
Accr13g01024 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 672 - -
Accr13g01024 777 Coils Coil 272 295 - -
Accr13g01024 777 Pfam WD domain, G-beta repeat 557 588 IPR001680 GO:0005515
Accr13g01024 777 Pfam WD domain, G-beta repeat 636 672 IPR001680 GO:0005515
Accr13g01024 777 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01024 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 555 592 - -
Accr13g01024 777 Gene3D Transferase(Phosphotransferase) domain 1 25 281 - -
Accr13g01024 777 PANTHER PROTEIN SPA1-RELATED 2 22 777 IPR044630 GO:0009640
Accr13g01024 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 672 IPR001680 GO:0005515
Accr13g01024 777 SMART serkin_6 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g01024 777 SUPERFAMILY Protein kinase-like (PK-like) 26 260 IPR011009 -
Accr13g01024 777 SMART WD40_4 460 495 IPR001680 GO:0005515
Accr13g01024 777 SMART WD40_4 681 720 IPR001680 GO:0005515
Accr13g01024 777 SMART WD40_4 736 775 IPR001680 GO:0005515
Accr13g01024 777 SMART WD40_4 591 630 IPR001680 GO:0005515
Accr13g01024 777 SMART WD40_4 548 588 IPR001680 GO:0005515
Accr13g01024 777 SMART WD40_4 506 545 IPR001680 GO:0005515
Accr13g01024 777 SMART WD40_4 634 672 IPR001680 GO:0005515
Accr13g01024 777 Gene3D - 440 777 IPR015943 GO:0005515
Accr13g01024 777 SUPERFAMILY WD40 repeat-like 466 774 IPR036322 GO:0005515
Accr13g01024 777 PRINTS G protein beta WD-40 repeat signature 575 589 IPR020472 -
Accr13g01024 777 PRINTS G protein beta WD-40 repeat signature 532 546 IPR020472 -
Accr13g01024 777 PRINTS G protein beta WD-40 repeat signature 659 673 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01024 Accr-Chr13 12299536 12304467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01024 545 719 Miscellaneous Gene Families AT5G08390 24.581 2.24e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Accr13g01024 WD40 0.00029 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01024 K26557 - pcin:129313660 1217.22