LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr13g01023	ATGGGTTGCTTTTGTTGCAAGCCCTCTGCCATTGATGACAGTAGGGAGAGTCCAAGGGAGCGATTATCGAATAAGGCTTCATTGGTCTCTTATGGATCTAGGGCTACCTCATCTAGGAGGGAGGATGGATATCGAGTGAAGGATAGAAATGATAATAATAATGATGGTAGAATTGCATCCATGGAAAAACAAGGAAATGGCTCTGTTCGTTTACAAGTTGATAATTATGAAAGAAAGAGAGAGAAAACAGAGTATGTCGTTGCACAGCATCCAGGACTTGGTAGTGTTCCAAAAGCCATAGAAGGCGAGCAGGTTGCAGCTGGGTGGCCTTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGTTGCCACGACGAGCAGATTCTTTTGAGAAGTTGGATAAAATTGGTCAGGGAACTTATAGCAATGTTTATAGGGCTCGTGATCTTGAACATAGGAAAATTGTTGCTTTGAAAAAAGTGAGGTTCGATAATCTTGAACCTGAGAGTGTTCGTTTCATGGCAAGGGAAATTCACATTCTTCGTAGGCTTGATCATCCAAACGTTATAAAACTGGAAGGTCTAGTTACATCAAGGATGTCTTGCAGCCTATACCTTGTTTTTGAGTACATGGAACATGACTTGGCTGGGCTTGCTTCTCATCCTGGACTAAAGTTTACAGAAGCACAGGTCAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTGCATCGTGATATTAAGGGATCCAACCTTCTGATTGACAACAACGGAATCTTGAAGATTGCTGACTTTGGTTTGGCAAGCTTTTATAATCCCAATCAAATTCAGCCATTGACTAGCCGAGTTGTCACTCTTTGGTATCGCCCTCCAGAGCTTTTGCTTGGCGCAACTTACTATGGCGCTGCAGTAGATTTATGGAGTACAGGCTGCATACTTGCTGAGCTGTATGCTGGAAAGCCTATAATGCCAGGAAGAACTGAGGTTGAACAGTTACATAAAATTTTTAAACTTTGTGGCTCACCTTCCGAGGATTATTGGAGGAAATCAAAGCTACCTCATGCAACAATATTTAAGCCCCAACAACCCTACAGGCGGTGTGTTGCAGAAACATTTAAGGAGTTTCCTTCACCTGCATTAGCACTCATGGAAACCCTTCTATCCATAGATCCTGCTGATCGTGGAACAGCAGCATCTGCTTTGAAGTGTGAGTTCTTCACAACAAAACCCTTACCTTGCGATCCTTCAAGTTTGCCCAAGTATCCTCCAAGCAAGGAATTTGATGCCAAAGCTCGGGATGAAGAAGCTAGAAGACAAGGAGCTCTTGGAAGCAAGGACCATAGACAAGGGACAAGAGAGTCACGGGCTGTCCCTGCACCTGATGCTAATGCTGAACTGGTCCTATCCATGCAGAAGAGACAAGGTCAATCCAACTCTAAGAGCCGAAGCGAGAAGTTCAACCCTCATCCTGAAGAAGTTGCTTCAGGATTTCCCATTGATCCGCCTAGGCCATCACAGGCTGTGGAAATAGGTGCAGATCACCAGGCACAGCAACATAAAAGAGCGTCCCATTCAGGTCCACTTTGTAACCGCACTGCTTGGACAAAAGTCGGGAAAAACCCGGATGATGCCCCAAAGATCTCCAATGGGGTTGACTTGTCAGCTATGTCCGGCTTAGTTGCAGCAAGAAGGAGTATGTTATCTGATGATCGCAGGGAAAGGTCCGGATCATCAAATTCAGAGGTTCCAAAACTAATAAGCAGGTTCCCAGGATCCTTGAAGGACGCGTCTGAATCATTGATGCAACATGAACAAAAGCATGCTGGAGCTCCTCCTCCAAAGGAAGAAGCGAGAGGCAGCAACAAAGACCCAATTCCTGTTGGTTATGGATCAAAGGGCCATAAAATTCATTATTCTGGTCCTTTGTTAGTTCCATCTAGCAACACAGATCAGATGCTGAAGGACCATGATCGCCAAATTCAAGAAGTCGTCCGAAGAGCACGGTTGGACAAGGCGAAGATGAGGAGAATTCAGGCTGAAGGGAACAACCAGATAAACACCAATTCGTTAATTGTTTCTGGTCGCTGA	2118	0.4509	MGCFCCKPSAIDDSRESPRERLSNKASLVSYGSRATSSRREDGYRVKDRNDNNNDGRIASMEKQGNGSVRLQVDNYERKREKTEYVVAQHPGLGSVPKAIEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEHRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFYNPNQIQPLTSRVVTLWYRPPELLLGATYYGAAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKEFPSPALALMETLLSIDPADRGTAASALKCEFFTTKPLPCDPSSLPKYPPSKEFDAKARDEEARRQGALGSKDHRQGTRESRAVPAPDANAELVLSMQKRQGQSNSKSRSEKFNPHPEEVASGFPIDPPRPSQAVEIGADHQAQQHKRASHSGPLCNRTAWTKVGKNPDDAPKISNGVDLSAMSGLVAARRSMLSDDRRERSGSSNSEVPKLISRFPGSLKDASESLMQHEQKHAGAPPPKEEARGSNKDPIPVGYGSKGHKIHYSGPLLVPSSNTDQMLKDHDRQIQEVVRRARLDKAKMRRIQAEGNNQINTNSLIVSGR	705

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr13g01023	705	SUPERFAMILY	Protein kinase-like (PK-like)	126	424	IPR011009	-
	Accr13g01023	705	FunFam	probable serine/threonine-protein kinase At1g54610	119	214	-	-
	Accr13g01023	705	SMART	serkin_6	132	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g01023	705	MobiDBLite	consensus disorder prediction	38	56	-	-
	Accr13g01023	705	CDD	STKc_CDK9_like	132	416	-	-
	Accr13g01023	705	Gene3D	Phosphorylase Kinase; domain 1	119	214	-	-
	Accr13g01023	705	MobiDBLite	consensus disorder prediction	479	493	-	-
	Accr13g01023	705	Gene3D	Transferase(Phosphotransferase) domain 1	215	455	-	-
	Accr13g01023	705	MobiDBLite	consensus disorder prediction	424	539	-	-
	Accr13g01023	705	FunFam	probable serine/threonine-protein kinase At1g54610	215	456	-	-
	Accr13g01023	705	MobiDBLite	consensus disorder prediction	574	634	-	-
	Accr13g01023	705	ProSitePatterns	Protein kinases ATP-binding region signature.	138	161	IPR017441	GO:0005524
	Accr13g01023	705	MobiDBLite	consensus disorder prediction	11	66	-	-
	Accr13g01023	705	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	252	264	IPR008271	GO:0004672\|GO:0006468
	Accr13g01023	705	Pfam	Protein kinase domain	132	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g01023	705	MobiDBLite	consensus disorder prediction	435	464	-	-
	Accr13g01023	705	ProSiteProfiles	Protein kinase domain profile.	132	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g01023	705	PANTHER	CELL DIVISION PROTEIN KINASE	130	422	-	-
	Accr13g01023	705	MobiDBLite	consensus disorder prediction	23	37	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr13g01023	Accr-Chr13	12289244	12294395	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr13g01023	124	448	Core Cell Cycle Gene Families	AT5G10270	54.545	9.32e-120	366

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Accr13g01023		Pkinase	1.9e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr13g01023	-		-	gmx:100792173	1201.81