LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr13g01022	ATGATGGGTTGCTTTTGTTGCAAGCCCTCTGCCATTGATGACAGTAGGGAGAGTCCAAGGGAGCGATTATCGAATAAGGCTTCATTGGTCTCTTATGGATCTAGGGCTACCTCATCTAGGAGGGAGGATGGATATCGAGTGAAGGATAGAAATGATAATAATAATGATGGTAGAATTGCATCCATGGAAAAACAAGGAAATGGCTCTGTTCGTTTACAAGTTGATAATTATGAAAGAAAGAGAGAGAAAACAGAGTATGTCGTTGCACAGCATCCAGGACTTGGTAGTGTTCCAAAAGCCATAGAAGGCGAGCAGGTTGCAGCTGGGTGGCCTTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGTTGCCACGACGAGCAGATTCTTTTGAGAAGTTGGATAAAATTGGTCAGGGAACTTATAGCAATGTTTATAGGGCTCGTGATCTTGAACATAGGAAAATTGTTGCTTTGAAAAAAGTGAGGTTCGATAATCTTGAACCTGAGAGTGTTCGTTTCATGGCAAGGGAAATTCACATTCTTCGTAGGCTTGATCATCCAAACGTTATAAAACTGGAAGGTCTAGTTACATCAAGGATGTCTTGCAGCCTATACCTTGTTTTTGAGTACATGGAACATGACTTGGCTGGGCTTGCTTCTCATCCTGGACTAAAGTTTACAGAAGCACAGGTCAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTGCATCGTGATATTAAGGGATCCAACCTTCTGATTGACAACAACGGAATCTTGAAGATTGCTGACTTTGGTTTGGCAAGCTTTTATAATCCCAATCAAATTCAGCCATTGACTAGCCGAGTTGTCACTCTTTGGTATCGCCCTCCAGAGCTTTTGCTTGGCGCAACTTACTATGGCGCTGCAGTAGATTTATGGAGTACAGGCTGCATACTTGCTGAGCTGTATGCTGGAAAGCCTATAATGCCAGGAAGAACTGAGGTTGAACAGTTACATAAAATTTTTAAACTTTGTGGCTCACCTTCCGAGGATTATTGGAGGAAATCAAAGCTACCTCATGCAACAATATTTAAGCCCCAACAACCCTACAGGCGGTGTGTTGCAGAAACATTTAAGGAGTTTCCTTCACCTGCATTAGCACTCATGGAAACCCTTCTATCCATAGATCCTGCTGATCGTGGAACAGCAGCATCTGCTTTGAAGTGTGAGTTCTTCACAACAAAACCCTTACCTTGCGATCCTTCAAGTTTGCCCAAGTATCCTCCAAGCAAGGAATTTGATGCCAAAGCTCGGGATGAAGAAGCTAGAAGACAAGGAGCTCTTGGAAGCAAGGACCATAGACAAGGGACAAGAGAGTCACGGGCTGTCCCTGCACCTGATGCTAATGCTGAACTGGTCCTATCCATGCAGAAGAGACAAGGTCAATCCAACTCTAAGAGCCGAAGCGAGAAGTTCAACCCTCATCCTGAAGAAGTTGCTTCAGGATTTCCCATTGATCCGCCTAGGCCATCACAGGCTGTGGAAATAGGTGCAGATCACCAGGCACAGCAACATAAAAGAGCGTCCCATTCAGGTCCACTTTGTAACCGCACTGCTTGGACAAAAGTCGGGAAAAACCCGGATGATGCCCCAAAGATCTCCAATGGGGTTGACTTGTCAGCTATGTCCGGCTTAGTTGCAGCAAGAAGGAGTATGTTATCTGATGATCGCAGGGAAAGGTCCGGATCATCAAATTCAGAGGTTCCAAAACTAATAAGCAGGTTCCCAGGATCCTTGAAGGACGCGTCTGAATCATTGATGCAACATGAACAAAAGCATGCTGGAGCTCCTCCTCCAAAGGAAGAAGCGAGAGGCAGCAACAAAGACCCAATTCCTGTTGGTTATGGATCAAAGGGCCATAAAATTCATTATTCTGGTCCTTTGTTAGTTCCATCTAGCAACACAGATCAGATGCTGAAGGACCATGATCGCCAAATTCAAGAAGTCGTCCGAAGAGCACGGTTGGACAAGGCGAAGATGAGGAGAATTCAGGCTGAAGGGAACAACCAGATAAACACCAATTCGTTAATTGTTTCTGGTCGCTGA	2121	0.4507	MMGCFCCKPSAIDDSRESPRERLSNKASLVSYGSRATSSRREDGYRVKDRNDNNNDGRIASMEKQGNGSVRLQVDNYERKREKTEYVVAQHPGLGSVPKAIEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEHRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFYNPNQIQPLTSRVVTLWYRPPELLLGATYYGAAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKEFPSPALALMETLLSIDPADRGTAASALKCEFFTTKPLPCDPSSLPKYPPSKEFDAKARDEEARRQGALGSKDHRQGTRESRAVPAPDANAELVLSMQKRQGQSNSKSRSEKFNPHPEEVASGFPIDPPRPSQAVEIGADHQAQQHKRASHSGPLCNRTAWTKVGKNPDDAPKISNGVDLSAMSGLVAARRSMLSDDRRERSGSSNSEVPKLISRFPGSLKDASESLMQHEQKHAGAPPPKEEARGSNKDPIPVGYGSKGHKIHYSGPLLVPSSNTDQMLKDHDRQIQEVVRRARLDKAKMRRIQAEGNNQINTNSLIVSGR	706

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr13g01022	706	Gene3D	Transferase(Phosphotransferase) domain 1	216	456	-	-
	Accr13g01022	706	SMART	serkin_6	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g01022	706	MobiDBLite	consensus disorder prediction	24	38	-	-
	Accr13g01022	706	ProSiteProfiles	Protein kinase domain profile.	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g01022	706	PANTHER	CELL DIVISION PROTEIN KINASE	131	423	-	-
	Accr13g01022	706	SUPERFAMILY	Protein kinase-like (PK-like)	127	425	IPR011009	-
	Accr13g01022	706	MobiDBLite	consensus disorder prediction	39	57	-	-
	Accr13g01022	706	MobiDBLite	consensus disorder prediction	480	494	-	-
	Accr13g01022	706	FunFam	probable serine/threonine-protein kinase At1g54610	216	457	-	-
	Accr13g01022	706	MobiDBLite	consensus disorder prediction	575	635	-	-
	Accr13g01022	706	Gene3D	Phosphorylase Kinase; domain 1	120	215	-	-
	Accr13g01022	706	MobiDBLite	consensus disorder prediction	13	67	-	-
	Accr13g01022	706	MobiDBLite	consensus disorder prediction	436	465	-	-
	Accr13g01022	706	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468
	Accr13g01022	706	ProSitePatterns	Protein kinases ATP-binding region signature.	139	162	IPR017441	GO:0005524
	Accr13g01022	706	Pfam	Protein kinase domain	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g01022	706	FunFam	probable serine/threonine-protein kinase At1g54610	120	215	-	-
	Accr13g01022	706	MobiDBLite	consensus disorder prediction	425	540	-	-
	Accr13g01022	706	CDD	STKc_CDK9_like	133	417	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr13g01022	Accr-Chr13	12289241	12294395	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr13g01022	125	449	Core Cell Cycle Gene Families	AT5G10270	54.545	8.52e-120	366

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Accr13g01022		Pkinase	1.9e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr13g01022	-		-	gmx:100792173	1201.81