Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01003 ATGGAACCAGCATGCTTTGACTGTAACGGGGGCATCTCGAGTAAGAAAAATTCGAAGTCAGTTTCTTCACAGGCGAGCGTAGCTGATAGTGACAACAATTGTTGCTTTGAGTGCAATATATGCTTAGAGTCAGCTCATGATCCTGTGGTCACTCTTTGTGGTCACCTCTACTGTTGGCCTTGCATATTCAGGTGGCTTCAAGTTCAGAACTCTTCTGATGAAGATCATGATGATGACCAGCTGAAACCTACATGCCCGGTTTGTAAGGCCGATCTCTCTCATACTTCATTGGTCCCTCTTTATGGCCGAGGCGCTCATAGTTCAGATTCTGAACTCAAGAAAACCAGGACGGATATAGGAATACCCCGTAGACCGCCTTCTCACGGATCGAACACTATGTTGAATTCTACAAGTGCATCTACTTCACAGCAATACTTGCCTCGCCTTTATGGAGGATATGCTGTTCCTAGATCACCATATCTTGGAGTTTCAGCCCTCACTAGTTTCTCTTATCCTATTATTGATATGTTCAGGGAAGTGGTCTTTGCAAGGACCTTTGGGAGTTCGGAGTCTAATTCGTTGGCGTATCGTTATGTTGGTTACTACCCTCATAATATTGGAAGTGACAGCCATAGATTGAGAAGGCAGGAAATGCTCATTGACAAGTCTCTAAACAGAGTCTCTTTCTTTCTCCTCTGTTGTGTCATTCTGTGTCTTCTCTTGTTCTGA 729 0.4417 MEPACFDCNGGISSKKNSKSVSSQASVADSDNNCCFECNICLESAHDPVVTLCGHLYCWPCIFRWLQVQNSSDEDHDDDQLKPTCPVCKADLSHTSLVPLYGRGAHSSDSELKKTRTDIGIPRRPPSHGSNTMLNSTSASTSQQYLPRLYGGYAVPRSPYLGVSALTSFSYPIIDMFREVVFARTFGSSESNSLAYRYVGYYPHNIGSDSHRLRRQEMLIDKSLNRVSFFLLCCVILCLLLF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01003 242 MobiDBLite consensus disorder prediction 105 137 - -
Accr13g01003 242 SMART ring_2 38 88 IPR001841 -
Accr13g01003 242 SUPERFAMILY RING/U-box 35 101 - -
Accr13g01003 242 MobiDBLite consensus disorder prediction 107 121 - -
Accr13g01003 242 ProSiteProfiles Zinc finger RING-type profile. 38 89 IPR001841 -
Accr13g01003 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
Accr13g01003 242 Pfam Zinc finger, C3HC4 type (RING finger) 38 88 IPR018957 GO:0046872
Accr13g01003 242 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Accr13g01003 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01003 Accr-Chr13 12087383 12088111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01003 9 228 C3H Transcription Factor Family AT4G27470 40.254 7.92e-47 154