Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00960 ATGATGTTATCAGCATCGCCAACCTCACTAGCGAGAAGTTCGCTAGAGGTAATGCTTGAATCGCTCCAGCGGAGAGACGAAGAGAATAAGCCAAAGGACTTGCCGCCGGCATTGCCAGCTCGTCCGACCTCCAAAGCTCGGCTTCCCTCAGCGAGAAGGTCGTTGCCGAATAACTTCAAGGTTAATGGAGATCCTGTTGATTTGGGACACAAGAGAAACGGAAGCCTCGGGAGCAAGAAGTTGAAGAGGGATGTGGAATCGCCTTACGCCATCGCATCAGAAGAGAACCAGAGCGACCAATTATCATCAAAGAGTCGAGAATACAACTCGGATGATAACGTTACTTATTTCATCAAGAAGAAACTTCATGTTTGGTGTAGGCAACCAAATGGGCACTGGGGACTAGGGAAGGTACAATCAACTTCAAAAGAAGAAGCTTTTGTTTTACTCACAAATGGAAATGTTATGAAAGTGGCCAGATCAGAGCTCCTACCTGCTAATCCAGATATTTTAAAAGGCGTCAATGATCTCATACAGCTGAGTTATCTGAATGAGCCATCAGTTCTTTACACTCTTCGTTTTAGATATTCTCAAGAAATGATCTATAGTAAAGCAGGACCTATTTTAATAGCATTCAATCCCTTTAAAGATGTCCAGATTTGTGGAAATGATCATGCCACAACTTATAGGCAGAGATGCATGACTGACCCACATGTTTATGCCGTGGCAAATGCAGCTTATAATGAGATGATGAGAGATACAGTAAATCAGTCCATCATCATAAGTGGTCAGAGTGGATCTGGGAAGACAGAGACAGCAAAAATTGTTATGCAATATTTGGCTGCTCTGGGTGGTGGAAGCTGTGGCATAGAAAATAAAGCCCTTCAGACACATTTTATTCTAGAAGCTTTTGGGAATGCAAAAACACCTAGGCACAACAATTCTAGCAGATTTGGGAAGTTAATTGAGATTCATTTCACTGCAGCAGGGAAAATATGTGGAGCTAAAATTCAAACCTTCATGTTACAAAAGTCAAGAGTTGCTCAGCTGACCAGTGGTGAGAGGTCATATCACATCTTTTACCAACTGTGTGCTGGATCTTTATCTGATCTTAAAGAGAGGCTGAACCTTAGAGAGGCCAGCAAATATAAATATCTTAATCAGAGTGACTGTATGACAATAGATGGTGTTGATGATGCTAAAATGTTTAATAAGCTACTGAAAGCGCTGGATGTTGTTCAAATTTGCAAAGAGGATCAAGAGCATTTATTTAAAATCCTTGCTGCAATATTATGGCTTGGAAATGTATCATTTCAAATATCTGACAATGAAAATCATGTTGTGGTGGTGGATGATGAAGCTGTCACCATTGCAGCCATGCTGATGGGTTGCAGTTCCCAAGAGTTAATAGTAACTTTATCTACTAGTAAAGTCCAAGCTGGCAAGGATTCTATTGCTAAAAGTTTGACATTGAAGCAGGCAATTGAAACAAGAGATGCACTGGCTCAATTTATGTATGCAAGTGTGTTTGAGTGGCTCATAAAAAAAATTAATAAGTCACTTGGATCTGGCAAACGGCGTACCGGGAGATCCATAAATATCTTTGATATTTGTGGATTTGAGTCATTCAAGAAAAACAGCTTTGAACAATTTTGTGTGAATTATGCTAACGAGAGGCTTCAACAACATTTCAATCGGCATATATTTAAACTTGAGCAGGAGAACTATGAAATGGATGGTGTTCATTGGACTGAAGTAGATTTTGCGGACAATCAAGGGTGCTTGGATCTATTTGAGAAGAAACCATCAGGGATACTTTCTTTGTTGGAAGAGGAATCAAATTTGCCCAAGGCCACTGATCTCACGTTTGCCAACAAACTTAAACAACACCTGAATGCTAATCCTTTCTTTAAAGGAGAAAGAGGGAGGGCTTTTGGCGTTCGTCACTTTGCAGGAGAGGTTTTGTATGATACAAACGGCTTTCTACAGCAGAACAAAGATCTGCTGCCTTCTGAATACATACAACTCCTGGCATCATGTAGCTGTCAACTGCAGCAGTTGTTCTCGAAAATGCTTAGCCAAACACAGAAACAACTGAATTCGTTACAAATAGGTGCATTAGACTTGCAGCAGAGTGTGTGTGCAAAGCTCAAGGGTCAATTGTTTGGATTAATGCACCAATTGGAGAACACCTCACCTCATTTTATTCACTGCATACGGCCAAACACTAAGCAGCTTCCTGGCGTATTTGATGAAGATCTTGTCATGCAACAACTCCGTTGCTGTGGAGTCTTGGAGGCTGTTAGACTTTCAAGGATTGGATATCCTATCCAAATGACACATCAAGAGTTTGCTGAAAGGTATGGGTTTTTGCTTTCGGAGCCCAATGTATTTCATGATCCACTGAGCATCTCAGTTGCTGTATTGCGACAATTTAATACCCCTCCTGAAATGTATCAGTTTGGCTACACCAAAGTGCATTTGCGAAAAGGGCAGATTGGTGCATTGGAGGATAGAAGAAAACAGGTTATGCAAGGAATACTTCAGGTTCAAAAATGGTTCCGTGGTCATAAAGCCCGTCAATATTTCCGCGAACTTAAGAATGGAGTGACGAAGTTGCAATCATTTGCTCATGGAGAAATTTTGAGGACGAAATATGGTATCGTTGAAAAGTCTTCTATGACTATTGATTGTAAAAATTTTGAGGATATTGAGGCAATCATACTACTACAGTCAGTAATTCGTGGGTGGCTGGCTAGGAGGAGGAATGCTAATGGTTTGAATAAGGTGAAGAAACACCCTAATAACGAAAAACTTCAGCGATATTCTCGTGTGAAGATGCCAGATATGAAGGAAGCGACCAGAGAGCAGGTTCAGAATTTGCCTTCAGCCCTAGACCAACTCCGAAGGCGGGTGCTTAAGGCTGAGGCAACTCTTGAACAAAAGGAAGAGGAAAATACTGCTTTGAGGGAGCAGCTGAGACAAAACGAAGCAAAATGGATTGAATATGAGGCGAAGATGAAATCAATGGAGGAGACATGGCAAAAACAGATGGCATCTTTGCAAGTGAGTCTTGCAGCTGCTAGAAAGAGCCTTGCTTCTGACAACAACACTGCTTATCCTGGTAGACAAGAAGCTGTGTCACCTCGTTACAATGATTCTGAAGATTTTAATTCTGTATTGTCTAGAACTCCTGGCGGGAGCACACCTATCAAGTTTTCTAGCTCTCTCTCCGTCTCTGATTCTGGAGCGGTGGGAAGAGAAGTTAATGGTACCCTATCTGCAGTCAGCAATCTGATGAGGGAATTTGAACAGAGAAGACAGACTTTTGATTGCGATGCCAGGGCTCTGCTTGATGCCAAGGCCGGGCAGTCTGTCATGAATCCGGATGAAGAATTTAGGAAACTTAAACATAGGTTTGAGGGATGGAAGAAAGAATACAAGTATAGATTACGGGAGACAAAAGCAAGACTTCATAAAGTAGGGAATTCAGAAGGGGAAAAGAGCCGTCGGAGATGGTGGGGGAAGTTAAGCTCAAGAGCTTCATAG 3549 0.417 MMLSASPTSLARSSLEVMLESLQRRDEENKPKDLPPALPARPTSKARLPSARRSLPNNFKVNGDPVDLGHKRNGSLGSKKLKRDVESPYAIASEENQSDQLSSKSREYNSDDNVTYFIKKKLHVWCRQPNGHWGLGKVQSTSKEEAFVLLTNGNVMKVARSELLPANPDILKGVNDLIQLSYLNEPSVLYTLRFRYSQEMIYSKAGPILIAFNPFKDVQICGNDHATTYRQRCMTDPHVYAVANAAYNEMMRDTVNQSIIISGQSGSGKTETAKIVMQYLAALGGGSCGIENKALQTHFILEAFGNAKTPRHNNSSRFGKLIEIHFTAAGKICGAKIQTFMLQKSRVAQLTSGERSYHIFYQLCAGSLSDLKERLNLREASKYKYLNQSDCMTIDGVDDAKMFNKLLKALDVVQICKEDQEHLFKILAAILWLGNVSFQISDNENHVVVVDDEAVTIAAMLMGCSSQELIVTLSTSKVQAGKDSIAKSLTLKQAIETRDALAQFMYASVFEWLIKKINKSLGSGKRRTGRSINIFDICGFESFKKNSFEQFCVNYANERLQQHFNRHIFKLEQENYEMDGVHWTEVDFADNQGCLDLFEKKPSGILSLLEEESNLPKATDLTFANKLKQHLNANPFFKGERGRAFGVRHFAGEVLYDTNGFLQQNKDLLPSEYIQLLASCSCQLQQLFSKMLSQTQKQLNSLQIGALDLQQSVCAKLKGQLFGLMHQLENTSPHFIHCIRPNTKQLPGVFDEDLVMQQLRCCGVLEAVRLSRIGYPIQMTHQEFAERYGFLLSEPNVFHDPLSISVAVLRQFNTPPEMYQFGYTKVHLRKGQIGALEDRRKQVMQGILQVQKWFRGHKARQYFRELKNGVTKLQSFAHGEILRTKYGIVEKSSMTIDCKNFEDIEAIILLQSVIRGWLARRRNANGLNKVKKHPNNEKLQRYSRVKMPDMKEATREQVQNLPSALDQLRRRVLKAEATLEQKEEENTALREQLRQNEAKWIEYEAKMKSMEETWQKQMASLQVSLAAARKSLASDNNTAYPGRQEAVSPRYNDSEDFNSVLSRTPGGSTPIKFSSSLSVSDSGAVGREVNGTLSAVSNLMREFEQRRQTFDCDARALLDAKAGQSVMNPDEEFRKLKHRFEGWKKEYKYRLRETKARLHKVGNSEGEKSRRRWWGKLSSRAS 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00960 1182 Gene3D Myosin VI head, motor domain, U50 subdomain 416 700 - -
Accr13g00960 1182 PANTHER MYOSIN 165 1174 - -
Accr13g00960 1182 Coils Coil 965 999 - -
Accr13g00960 1182 SMART MYSc_2a 166 842 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr13g00960 1182 CDD MYSc_Myo8 186 829 IPR036022 -
Accr13g00960 1182 Gene3D - 774 842 - -
Accr13g00960 1182 MobiDBLite consensus disorder prediction 1159 1182 - -
Accr13g00960 1182 FunFam Myosin heavy chain 355 411 - -
Accr13g00960 1182 PRINTS Myosin heavy chain signature 299 326 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr13g00960 1182 PRINTS Myosin heavy chain signature 202 221 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr13g00960 1182 PRINTS Myosin heavy chain signature 531 559 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr13g00960 1182 PRINTS Myosin heavy chain signature 256 281 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr13g00960 1182 PRINTS Myosin heavy chain signature 584 612 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr13g00960 1182 ProSiteProfiles Myosin motor domain profile. 172 841 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr13g00960 1182 Gene3D - 845 929 - -
Accr13g00960 1182 ProSiteProfiles IQ motif profile. 844 872 IPR000048 GO:0005515
Accr13g00960 1182 Gene3D - 541 731 - -
Accr13g00960 1182 MobiDBLite consensus disorder prediction 1159 1174 - -
Accr13g00960 1182 MobiDBLite consensus disorder prediction 1035 1055 - -
Accr13g00960 1182 Pfam IQ calmodulin-binding motif 905 922 IPR000048 GO:0005515
Accr13g00960 1182 Pfam IQ calmodulin-binding motif 847 864 IPR000048 GO:0005515
Accr13g00960 1182 ProSiteProfiles IQ motif profile. 905 932 IPR000048 GO:0005515
Accr13g00960 1182 MobiDBLite consensus disorder prediction 21 83 - -
Accr13g00960 1182 Gene3D Kinesin motor domain 176 769 IPR036961 -
Accr13g00960 1182 Gene3D - 355 414 - -
Accr13g00960 1182 Pfam Myosin head (motor domain) 174 829 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr13g00960 1182 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 119 168 IPR004009 GO:0003774|GO:0005524|GO:0016459
Accr13g00960 1182 SMART iq_5 842 864 IPR000048 GO:0005515
Accr13g00960 1182 SMART iq_5 865 887 IPR000048 GO:0005515
Accr13g00960 1182 SMART iq_5 902 924 IPR000048 GO:0005515
Accr13g00960 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 923 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00960 Accr-Chr13 11325976 11338313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00960 1 1176 Myosins gene family AT5G54280 59.740 0.0 1445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00960 K10357 - gmx:100819335 1660.2