Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00954 ATGAACGGGAAGGCCAACGTTTCTAAAGAGCTCAACGCAAAGCATAAAAAGATATTGGAAGGACTTCTTAAACTGCCAGAAAATAGGGAATGTGCAGACTGCAAAGCTAAAGGTCCAAGGTGGGCTAGTGTGAACCTAGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTCTTGGGGTACATATTTCGAAGGTTCGGTCTGCAACTCTGGACACCTGGCTTCCAGAGCAGGTTGCATTCACTCAATCCATGGGAAATGAGAAGGCTAATTCTTACTGGGAGGCAGAGCTGCCCCCAAATTATGATAGAGTTGGAATCGAGAATTTTATTCGTGCAAAATATGAAGAGAAGAGATGGATTCCGAAGGATGGGAAAGTAAAATCACCTTCTAGGCAGCAGGAAGAGAGGACTGCTTCAAATTGGCAGAGGCCTGCAGAAAGAAGTGGGCACGGTTATACATCTGCTTCTGAGAACACTTTTCATGAAAGAAAGAAAATTCAGGCGACAACTACAATTCCTGGAACGAGAAATAATGTCCCTGCTCCTCCAAAAGTACCTGAACAGGTAACTCCTGCAAAACCTCAGCATGTAGAGAAAGTGGAACCTGTGGCTCCAAAACCGCAAACTGAATCAACTAAACAAGCTACTGTCATGGCTCAGAATACCCCTTCAAAAGTTGACTATGCTACAGACCTTTTCAACTTGTTATCCATGGATGCCCCAGGTGAAAATGGCTCAGAGGAAGCTGGTACTACTACTGACGATAGTAACTGGGAAGGTTTTCCGTCCGCTGCAGAAGCATCAACAACTGAGAAGACTGGTTCCACAAAAGCAGCGGAGAGCACTCCCAAATCTAATTCTGGAATTGAGGATCTATTCAAGGATTCACCTTCAGTGACTCCTTTAGTTCCAGTAAAACCTCAGAAAGATTTGAAGAATGATATCATGAGCCTCTTTGAAAAGTCCAGCATGGTCTCTCCATTTTCTGCAAACCAGCAACAGCTTGCCATGCTTGCACAGCAACAGCAGGCCCTTCTAATGGCTGCTTCCGCCAACTCTGCCGTTGGGAACCCCAAGTATCCTGGTAGTATACAACAACCTGTACTGAATGGATCCAATATTCCTGTCCCAAGTTGGCCAGCTGCCAATTACTCAGTTCCTGGAGTGGTGCCGATGGCTGGTCAGGGAGAGCTGCAGAAACTAATGCAGACTAGGGGCATGACTCCAGCACATCCAGCGTTGAGTTCTGTGCAGTATCCAACATCTAGTTTTTATACAATGGGACCGGTTAGACCCGTTAATGGCGTCACGGCCACGGGAGTGAGTAGAGTTCCACCAGCCGCTTCAATGTCGTCATCAACCTCCTCACAGGCGCCAAAGGACTATGATTTCTCCTCTTTAACACAATGGATGTATACCAAACCCTGA 1437 0.4614 MNGKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFTQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWIPKDGKVKSPSRQQEERTASNWQRPAERSGHGYTSASENTFHERKKIQATTTIPGTRNNVPAPPKVPEQVTPAKPQHVEKVEPVAPKPQTESTKQATVMAQNTPSKVDYATDLFNLLSMDAPGENGSEEAGTTTDDSNWEGFPSAAEASTTEKTGSTKAAESTPKSNSGIEDLFKDSPSVTPLVPVKPQKDLKNDIMSLFEKSSMVSPFSANQQQLAMLAQQQQALLMAASANSAVGNPKYPGSIQQPVLNGSNIPVPSWPAANYSVPGVVPMAGQGELQKLMQTRGMTPAHPALSSVQYPTSSFYTMGPVRPVNGVTATGVSRVPPAASMSSSTSSQAPKDYDFSSLTQWMYTKP 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00954 478 CDD ArfGap 19 117 - -
Accr13g00954 478 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Accr13g00954 478 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Accr13g00954 478 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Accr13g00954 478 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Accr13g00954 478 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Accr13g00954 478 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Accr13g00954 478 MobiDBLite consensus disorder prediction 136 159 - -
Accr13g00954 478 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Accr13g00954 478 MobiDBLite consensus disorder prediction 126 225 - -
Accr13g00954 478 MobiDBLite consensus disorder prediction 210 225 - -
Accr13g00954 478 MobiDBLite consensus disorder prediction 240 308 - -
Accr13g00954 478 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 477 IPR044520 GO:0005096
Accr13g00954 478 MobiDBLite consensus disorder prediction 249 296 - -
Accr13g00954 478 Pfam Putative GTPase activating protein for Arf 17 124 IPR001164 GO:0005096
Accr13g00954 478 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00954 Accr-Chr13 11281555 11287709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00954 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 1.14e-29 117