Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00898 ATGGCGGATGATCAATTTCATCAAGCAACTGGAAATTGGTGGGACTCGTCTTCTTCAAGAACAGCTCCGTCCCAACAGTCATCTTCCTCAAACCTCACCAGCTTCCCCAACTTCCCTTGGAACACAGATCATCATCACGACCTCAGGCCAACCTCTTCCATGTCCGATTCTCCCACCTCCACTCACCCAAACTTGCATATGATCATGGCTTGGAACAATAATAACCACCCCTCCCATCATCATAGTCTCCTAGAGGAGAAGGGGGTGTCCGATGGCCGATTCAGACCCATGTTTCAAGAGAACAATCTGAGTTCAGGAGGCACTAATTTTCATCATCAGCATCAGCAAGTTGAGTGGAGAGAGAAGCTTTTGTTTTCTACAGAATCATCTTCAACTTCTGGGGATAGTATAGTGACCACAAGCCAAGGCTTAGCTAATTCTAGTTTCCATATGGATTCTAATAATTCCTATTCTGCTGCAAATCCTTCAATATTATTACAGGGATTATTGGCACCTGAAGCTTCTTCTGCTTCCTCCTCCTTCGACAATAATAATCATCATAATCGTTCCTGCTTCAATAGTTTTCCCTATGCCTCGGCCTTGAGCTCTAGTAGCGATCAGTTAATGGCTTCTCAGTTTCTTAGGGCTTCGCCGCCCAAACAAACACCAAATCACGCCGGCGGCGGTAACAGGCAGTTGCAGTTTACGAACAACACGACCTTCTGGAACGCTTCGGAAGCTCATCATCATCAACTTGCCACCATTAAAGAGGCTCGACCTTCCTGCTTCTTCCCTAATTCCTTGCAGCCTCCTTTTCACTCTCCCAATTTTGATGCACAATCAAAGAATATTTGTGGAGGAAGAGAAACTAGTAGTGTGGGGAAGAAAAGTGGTGGAGAGACAGCACCAAAAAGGTCTAGAAACGAAACCTCATCAACTTTGCCACCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACCGTATTACTGCTCTTCAACAGTTGGTTTCGCCTTTTGGGAAGACTGATACTGCCTCAGTGCTGTCTGAAGCCATTGAATATATCAAACTCCTCCACGAACAAGTCTCCGTTTTAAGCTCCCCATATATAAAAAGTGGAGCTCCCTTACAGCACCAACAGAGTTCTGGTAAATGTAAGGAAAATGAAGCCCTAAAACAAGACCTGAGAAGCCGAGGGTTGTGTTTGGTGCCAGTTTCAAGTACTTTCCCAGTCACTCACGAAACCACTGTTGATTTTTGGATGCCAACTTTTGGAGCCACTTTCAGATAA 1287 0.4507 MADDQFHQATGNWWDSSSSRTAPSQQSSSSNLTSFPNFPWNTDHHHDLRPTSSMSDSPTSTHPNLHMIMAWNNNNHPSHHHSLLEEKGVSDGRFRPMFQENNLSSGGTNFHHQHQQVEWREKLLFSTESSSTSGDSIVTTSQGLANSSFHMDSNNSYSAANPSILLQGLLAPEASSASSSFDNNNHHNRSCFNSFPYASALSSSSDQLMASQFLRASPPKQTPNHAGGGNRQLQFTNNTTFWNASEAHHHQLATIKEARPSCFFPNSLQPPFHSPNFDAQSKNICGGRETSSVGKKSGGETAPKRSRNETSSTLPPFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKLLHEQVSVLSSPYIKSGAPLQHQQSSGKCKENEALKQDLRSRGLCLVPVSSTFPVTHETTVDFWMPTFGATFR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00898 428 CDD bHLH_AtbHLH_like 314 365 IPR045239 -
Accr13g00898 428 Gene3D - 318 396 IPR036638 GO:0046983
Accr13g00898 428 MobiDBLite consensus disorder prediction 275 297 - -
Accr13g00898 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 372 IPR036638 GO:0046983
Accr13g00898 428 MobiDBLite consensus disorder prediction 9 40 - -
Accr13g00898 428 FunFam Transcription factor bHLH123 family 318 380 - -
Accr13g00898 428 MobiDBLite consensus disorder prediction 1 61 - -
Accr13g00898 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Accr13g00898 428 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 113 409 - -
Accr13g00898 428 MobiDBLite consensus disorder prediction 275 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00898 Accr-Chr13 10380817 10383971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00898 233 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 62.500 6.05e-70 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00898 - - gmx:100796549 384.03