Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00897 ATGGCGGATGATCAATTTCATCAAGCAACTGGAAATTGGTGGGACTCGTCTTCTTCAAGAACAGCTCCGTCCCAACAGTCATCTTCCTCAAACCTCACCAGCTTCCCCAACTTCCCTTGGAACACAGATCATCATCACGACCTCAGGCCAACCTCTTCCATGTCCGATTCTCCCACCTCCACTCACCCAAACTTGCATATGATCATGGCTTGGAACAATAATAACCACCCCTCCCATCATCATAGTCTCCTCAGAGAGGAGAAGGGGGTGTCCGATGGCCGATTCAGACCCATGTTTCAAGAGAACAATCTGAGTTCAGGAGGCACTAATTTTCATCATCAGCATCAGCAAGTTGAGTGGAGAGAGAAGCTTTTGTTTTCTACAGAATCATCTTCAACTTCTGGGGATAGTATAGTGACCACAAGCCAAGGCTTAGCTAATTCTAGTTTCCATATGGATTCTAATAATTCCTATTCTGCTGCAAATCCTTCAATATTATTACAGGGATTATTGGCACCTGAAGCTTCTTCTGCTTCCTCCTCCTTCGACAATAATAATCATCATAATCGTTCCTGCTTCAATAGTTTTCCCTATGCCTCGGCCTTGAGCTCTAGTAGCGATCAGTTAATGGCTTCTCAGTTTCTTAGGGCTTCGCCGCCCAAACAAACACCAAATCACGCCGGCGGCGGTAACAGGCAGTTGCAGTTTACGAACAACACGACCTTCTGGAACGCTTCGGAAGCTCATCATCATCAACTTGCCACCATTAAAGAGGCTCGACCTTCCTGCTTCTTCCCTAATTCCTTGCAGCCTCCTTTTCACTCTCCCAATTTTGATGCACAATCAAAGAATATTTGTGGAGGAAGAGAAACTAGTAGTGTGGGGAAGAAAAGTGGTGGAGAGACAGCACCAAAAAGGTCTAGAAACGAAACCTCATCAACTTTGCCACCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACCGTATTACTGCTCTTCAACAGTTGGTTTCGCCTTTTGGGAAGACTGATACTGCCTCAGTGCTGTCTGAAGCCATTGAATATATCAAACTCCTCCACGAACAAGTCTCCGTTTTAAGCTCCCCATATATAAAAAGTGGAGCTCCCTTACAGCACCAACAGAGTTCTGGTAAATGTAAGGAAAATGAAGCCCTAAAACAAGACCTGAGAAGCCGAGGGTTGTGTTTGGTGCCAGTTTCAAGTACTTTCCCAGTCACTCACGAAACCACTGTTGATTTTTGGATGCCAACTTTTGGAGCCACTTTCAGATAA 1290 0.4512 MADDQFHQATGNWWDSSSSRTAPSQQSSSSNLTSFPNFPWNTDHHHDLRPTSSMSDSPTSTHPNLHMIMAWNNNNHPSHHHSLLREEKGVSDGRFRPMFQENNLSSGGTNFHHQHQQVEWREKLLFSTESSSTSGDSIVTTSQGLANSSFHMDSNNSYSAANPSILLQGLLAPEASSASSSFDNNNHHNRSCFNSFPYASALSSSSDQLMASQFLRASPPKQTPNHAGGGNRQLQFTNNTTFWNASEAHHHQLATIKEARPSCFFPNSLQPPFHSPNFDAQSKNICGGRETSSVGKKSGGETAPKRSRNETSSTLPPFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKLLHEQVSVLSSPYIKSGAPLQHQQSSGKCKENEALKQDLRSRGLCLVPVSSTFPVTHETTVDFWMPTFGATFR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00897 429 FunFam Transcription factor bHLH123 family 319 381 - -
Accr13g00897 429 MobiDBLite consensus disorder prediction 276 318 - -
Accr13g00897 429 MobiDBLite consensus disorder prediction 1 65 - -
Accr13g00897 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 373 IPR036638 GO:0046983
Accr13g00897 429 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 114 410 - -
Accr13g00897 429 MobiDBLite consensus disorder prediction 9 40 - -
Accr13g00897 429 CDD bHLH_AtbHLH_like 315 366 IPR045239 -
Accr13g00897 429 Gene3D - 319 397 IPR036638 GO:0046983
Accr13g00897 429 MobiDBLite consensus disorder prediction 276 298 - -
Accr13g00897 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 358 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00897 Accr-Chr13 10380817 10383971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00897 234 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 62.500 6.30e-70 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00897 - - gmx:100796549 382.874